Pre_GI Gene

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Host: NC_012668 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012668:368305 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3683053695431239hypothetical proteinBLASTP
3698053711721368metallo-beta-lactamase family protein RNA-specificQuickGO ontologyBLASTP
371212371334123hypothetical proteinBLASTP
371315371869555lipid carrier UDP-N-acetylgalactosaminyltransferaseQuickGO ontologyBLASTP
371877372848972UDP-glucose 4-epimeraseQuickGO ontologyBLASTP
3730013748661866nucleoside-diphosphate sugar epimerasedehydrataseQuickGO ontologyBLASTP
3747543759861233glycosyltransferaseQuickGO ontologyBLASTP
376021376839819RfbT proteinQuickGO ontologyBLASTP
3792173816942478acyl protein synthaseacyl-CoA reductase RfbNQuickGO ontologyBLASTP
3816853828091125acetaldehyde dehydrogenaseQuickGO ontologyBLASTP
3828183842331416long-chain-fatty-acid--CoA ligaseQuickGO ontologyBLASTP
384239384481243acyl carrier proteinQuickGO ontologyBLASTP
384520385335816O-antigen export system ATP-binding proteinQuickGO ontologyBLASTP
385274386068795O-antigen export system permease proteinQuickGO ontologyBLASTP
3860403874311392O-antigen export system polymerase or transferaseQuickGO ontologyBLASTP
3874283885311104UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseQuickGO ontologyBLASTP
3885423896631122GDP-mannose 46-dehydrataseQuickGO ontologyBLASTP
3896663910571392phosphomannomutaseQuickGO ontologyBLASTP
3910603924571398mannose-1-phosphate guanylyltransferase GDPQuickGO ontologyBLASTP
392899393843945ADP-L-glycero-D-mannoheptose-6-epimeraseQuickGO ontologyBLASTP
3940023957741773polysaccharide deacetylaseQuickGO ontologyBLASTP
395782396348567transferase hexapeptide repeat familyQuickGO ontologyBLASTP
3963503975491200O-antigen ligaseQuickGO ontologyBLASTP
3975463985861041hypothetical proteinBLASTP
3985833996321050hypothetical proteinBLASTP
399629400417789mannosyltransferase OCH1-like enzymeQuickGO ontologyBLASTP
40041740169712813-deoxy-D-manno-octulosonic-acid transferaseQuickGO ontologyBLASTP
401694402074381hypothetical proteinBLASTP
4020654036481584capsular polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
403645404388744nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesistranslation initiation factor 2B gammaepsilon subunits eIQuickGO ontologyBLASTP
404385405314930lipopolysaccharide synthesis protein WavEQuickGO ontologyBLASTP