Pre_GI: BLASTP Hits

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Query: NC_008593:841291:845451 Clostridium novyi NT, complete genome

Start: 845451, End: 847223, Length: 1773

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015425:906969:9111619111619128671707Clostridium botulinum BKT015925 chromosome, complete genomeputative B12-binding Fe-S oxidoreductase0892
NC_009697:2680607:2694388269438826960671680Clostridium botulinum A str. ATCC 19397 chromosome, completeB12-binding Fe-S oxidoreductase0667
NC_012563:2979147:2995558299555829972431686Clostridium botulinum A2 str. Kyoto, complete genomeputative B12-binding Fe-S oxidoreductase0660
NC_010723:2735196:2748496274849627501601665Clostridium botulinum E3 str. Alaska E43, complete genomeradical SAM domain protein0658
NC_010674:2930259:2944183294418329458471665Clostridium botulinum B str. Eklund 17B, complete genomeradical SAM domain protein0650
NC_003366:1901898:1917270191727019189491680Clostridium perfringens str. 13, complete genomeMg-protoporphyrin IX monomethyl ester oxidative cyclase1e-171603
NC_008261:2117207:2132583213258321342621680Clostridium perfringens ATCC 13124, complete genomeradical SAM domain protein1e-171603
NC_008262:1795914:1806633180663318083121680Clostridium perfringens SM101, complete genomeradical SAM domain protein8e-171600
NC_018664:985689:9878449878449896281785Clostridium acidurici 9a chromosome, complete genomecobalamin B12-binding/radical SAM domain-containing protein2e-106386
NC_009922:1917271:1933111193311119349071797Alkaliphilus oremlandii OhILAs, complete genomeRadical SAM domain protein7e-105381
NC_017179:805867:8071378071378088911755Clostridium difficile BI1, complete genomeadenosylcobamide-dependent radical SAM protein7e-102371
NC_013315:796313:7975837975837993371755Clostridium difficile CD196 chromosome, complete genomeadenosylcobamide-dependent radical SAM protein7e-102371
NC_014614:1309203:1309203130920313110081806Clostridium sticklandii, complete genomeputative adenosylcobamide-dependent radical SAM superfamily protein1e-90334
NC_017192:1841987:1872735187273518742461512Arcobacter sp. L, complete genomehypothetical protein6e-62239
NC_011567:2405000:2414483241448324159881506Anoxybacillus flavithermus WK1, complete genomeRadical SAM superfamily enzyme4e-27123
NC_015740:2966184:2976452297645229776781227Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completesam domain-containing protein7e-1789.4
NC_009953:3316782:3332718333271833345951878Salinispora arenicola CNS-205 chromosome, complete genomeradical SAM domain-containing protein6e-1582.8
NC_010572:1081236:1084540108454010863931854Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative methyltransferase2e-1274.7
NC_010506:2441944:2457737245773724592571521Shewanella woodyi ATCC 51908, complete genomeRadical SAM domain protein5e-1169.7
NC_009033:653462:6723696723696737931425Staphylothermus marinus F1, complete genomeRadical SAM domain protein7e-1169.3
NC_007954:1324062:1343878134387813455781701Shewanella denitrificans OS217, complete genomeRadical SAM4e-1067
NC_011060:459615:5010805010805029091830Pelodictyon phaeoclathratiforme BU-1, complete genomeRadical SAM domain protein4e-1066.6
NC_008639:2968000:2968727296872729705531827Chlorobium phaeobacteroides DSM 266, complete genomeMagnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase1e-0965.5
NC_013849:19404:3305733057344541398Ferroglobus placidus DSM 10642 chromosome, complete genomeRadical SAM domain protein2e-0965.1
NC_015682:205900:2467522467522481191368Thermodesulfobacterium sp. OPB45 chromosome, complete genomeRadical SAM domain-containing protein2e-0964.3
NC_015437:1685824:1693465169346516952371773Selenomonas sputigena ATCC 35185 chromosome, complete genomeRadical SAM domain protein4e-0963.9
NC_014844:762794:7785687785687800221455Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeRadical SAM domain-containing protein6e-0962.8
NC_007955:1664998:1681943168194316834061464Methanococcoides burtonii DSM 6242, complete genomeFe-S protein, radical SAM family9e-0962.4
NC_015416:1571451:1573507157350715752581752Methanosaeta concilii GP-6 chromosome, complete genomeB12 binding domain/radical SAM domain fusion protein1e-0862
NC_020304:129321:1511821511821526781497Desulfocapsa sulfexigens DSM 10523, complete genomeFe-S oxidoreductase3e-0860.8
NC_007955:1523500:1545251154525115463571107Methanococcoides burtonii DSM 6242, complete genomeFe-S protein, radical SAM family4e-0860.1
NC_008312:7546500:7570338757033875717681431Trichodesmium erythraeum IMS101, complete genomeRadical SAM7e-0859.3
NC_008278:296526:3192483192483208161569Frankia alni ACN14a, complete genomeputative F-S oxidoreductase; putative methyltransferase.9e-0859.3
NC_014960:1735786:1760110176011017617441635Anaerolinea thermophila UNI-1, complete genomehypothetical protein4e-0757
NC_014166:2959688:2960989296098929624491461Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeradical SAM domain-containing protein2e-0654.7
NC_000961:1481685:1494072149407214953581287Pyrococcus horikoshii OT3, complete genomehypothetical protein3e-0653.9
NC_013216:3376186:3394582339458233962401659Desulfotomaculum acetoxidans DSM 771, complete genomeRadical SAM domain protein6e-0653.1