Pre_GI: BLASTP Hits

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Query: NC_007951:2087385:2108786 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 2108786, End: 2109004, Length: 219

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010278:1467146:1468739146873914709372199Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,DNA-dependent helicase II2e-1271.2
NC_012438:192065:1930181930181951202103Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeATP-dependent DNA helicase PcrA5e-1269.7
NC_008262:2433979:2461165246116524634202256Clostridium perfringens SM101, complete genomeATP-dependent DNA helicase PcrA1e-1168.6
NC_010513:44886:4643546435486062172Xylella fastidiosa M12 chromosome, complete genomeDNA-dependent helicase II2e-1167.8
NC_014614:656000:6578816578816600432163Clostridium sticklandii, complete genomeATP-dependent DNA helicase5e-1166.6
NC_014924:3065430:3065430306543030676102181Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeDNA helicase II5e-1166.2
NC_002488:45219:4680546805489912187Xylella fastidiosa 9a5c, complete genomeDNA helicase II6e-1166.2
NC_011297:1224749:1231122123112212329991878Dictyoglomus thermophilum H-6-12, complete genomeATP-dependent DNA helicase PcrA1e-1065.5
NC_011661:1411383:1411383141138314132601878Dictyoglomus turgidum DSM 6724, complete genomeUvrD/REP helicase2e-1064.7
NC_016944:168530:1942241942241963952172Vibrio cholerae IEC224 chromosome I, complete sequenceDNA-dependent helicase II2e-1064.7
NC_016445:2593800:2619482261948226216532172Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA-dependent helicase II2e-1064.7
NC_012668:442601:4426014426014447722172Vibrio cholerae MJ-1236 chromosome 1, complete sequenceDNA-dependent helicase II2e-1064.7
NC_002505:168532:1942141942141963852172Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeDNA helicase II2e-1064.7
NC_014541:4167916:4183237418323741854022166Ferrimonas balearica DSM 9799 chromosome, complete genomeATP-dependent DNA helicase UvrD2e-1064.3
NC_013421:1780722:1782499178249917843191821Pectobacterium wasabiae WPP163, complete genomeUvrD/REP helicase2e-1064.3
NC_015573:1671000:1688552168855216907562205Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeATP-dependent DNA helicase PcrA2e-1064.3
NC_018419:226000:2279972279972301502154Secondary endosymbiont of Ctenarytaina eucalypti chromosome,ATP-dependent DNA helicase UvrD4e-1063.5
NC_014550:615609:6289646289646313422379Arthrobacter arilaitensis Re117, complete genomeATP-dependent DNA helicase PcrA4e-1063.5
NC_013850:1753716:1762794176279417646111818Klebsiella variicola At-22 chromosome, complete genomeUvrD/REP helicase4e-1063.5
NC_009138:1974935:2006405200640520081711767Herminiimonas arsenicoxydans, complete genomeputative DNA helicase II5e-1063.2
NC_010688:2781624:2830414283041428322281815Xanthomonas campestris pv. campestris, complete genomeATP-dependent DNA helicase7e-1062.4
NC_007974:2048000:2081873208187320836481776Ralstonia metallidurans CH34 chromosome 2, complete sequenceSuperfamily I DNA and RNA helicases-like protein8e-1062.4
NC_014098:2225174:2258626225862622608482223Bacillus tusciae DSM 2912 chromosome, complete genomeUvrD/REP helicase1e-0962
NC_007347:3612918:3635779363577936378932115Ralstonia eutropha JMP134 chromosome 1, complete sequenceUvrD/REP helicase1e-0962
NC_008570:236500:2417872417872439582172Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeDNA helicase II1e-0961.6
NC_021184:1484352:1504552150455215064291878Desulfotomaculum gibsoniae DSM 7213, complete genomeDNA/RNA helicase, superfamily I1e-0961.6
NC_002488:2546495:2556133255613325581752043Xylella fastidiosa 9a5c, complete genomeATP-dependent DNA helicase1e-0961.6
NC_003919:5056650:5056650505665050586261977Xanthomonas axonopodis pv. citri str. 306, complete genomeATP-dependent DNA helicase2e-0961.6
NC_014831:329983:3299833299833323582376Thermaerobacter marianensis DSM 12885 chromosome, complete genomeATP-dependent DNA helicase PcrA2e-0961.2
NC_012691:2614603:2651101265110126529151815Tolumonas auensis DSM 9187, complete genomeUvrD/REP helicase2e-0961.2
NC_009092:1441813:1461981146198114640172037Shewanella loihica PV-4, complete genomeUvrD/REP helicase2e-0961.2
NC_018012:3102215:3126846312684631290172172Thiocystis violascens DSM 198 chromosome, complete genomeDNA/RNA helicase2e-0961.2
NC_010655:1160384:1160384116038411623902007Akkermansia muciniphila ATCC BAA-835, complete genomeUvrD/REP helicase2e-0961.2
NC_009488:1871912:1899064189906419012142151Orientia tsutsugamushi str. Boryong, complete genomeDNA helicase II, CAI276902e-0960.8
NC_017190:2130651:2212720221272022145161797Bacillus amyloliquefaciens LL3 chromosome, complete genomeUvrD/REP helicase3e-0960.5
NC_017062:547317:5481925481925501561965Rickettsia typhi str. B9991CWPP chromosome, complete genomeDNA helicase II3e-0960.5
NC_011901:625712:6616286616286636432016Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeATP-dependent DNA helicase Rep4e-0960.1
NC_016779:312500:3133533133533156142262Bacillus cereus F837/76 chromosome, complete genomeATP-dependent DNA helicase UvrD/PcrA4e-0960.1
NC_017200:345502:3455023455023477512250Bacillus thuringiensis serovar finitimus YBT-020 chromosome,ATP-dependent DNA helicase PcrA4e-0960.1
NC_007644:2099878:2099878209987821020672190Moorella thermoacetica ATCC 39073, complete genomeATP-dependent DNA helicase PcrA6e-0959.7
NC_006347:2899653:2906221290622129085812361Bacteroides fragilis YCH46, complete genomeATP-dependent DNA helicase5e-0959.7
NC_003228:2973266:2979834297983429821942361Bacteroides fragilis NCTC 9343, complete genomeputative helicase5e-0959.7
NC_016776:2956444:2997159299715929995192361Bacteroides fragilis 638R, complete genomeputative helicase5e-0959.7
NC_018515:3169973:3177608317760831798482241Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeATP-dependent DNA helicase PcrA5e-0959.7
NC_009615:1067603:1087220108722010895622343Parabacteroides distasonis ATCC 8503 chromosome, complete genomehelicase8e-0959.3
NC_016599:3434996:3434996343499634373742379Owenweeksia hongkongensis DSM 17368 chromosome, complete genomeDNA/RNA helicase1e-0858.9
NC_018720:1186058:1186058118605811885712514Bifidobacterium asteroides PRL2011 chromosome, complete genomeATP-dependent DNA helicase PcrA1e-0858.9
NC_008752:2056547:2074331207433120767872457Acidovorax avenae subsp. citrulli AAC00-1, complete genomeUvrD/REP helicase9e-0958.9
NC_014974:1539950:1545650154565015475151866Thermus scotoductus SA-01 chromosome, complete genomeATP-dependent DNA helicase PcrA9e-0958.9
NC_017188:1172181:1243369124336912451651797Bacillus amyloliquefaciens TA208 chromosome, complete genomeATP-dependent DNA helicase, uvrD-like protein9e-0958.9
NC_017191:1173989:1244946124494612467421797Bacillus amyloliquefaciens XH7 chromosome, complete genomeUvrD/REP helicase9e-0958.9
NC_014363:1680578:1680578168057816832172640Olsenella uli DSM 7084 chromosome, complete genomeUvrD/REP helicase9e-0958.9
NC_014973:243000:2582002582002603922193Geobacter sp. M18 chromosome, complete genomeUvrD/REP helicase1e-0858.5
NC_008767:1363288:1380391138039113824632073Neisseria meningitidis FAM18, complete genomeATP-dependent DNA helicase2e-0858.2
NC_015556:130437:1304371304371326382202Pseudomonas fulva 12-X chromosome, complete genomeUvrD/REP helicase2e-0858.2
NC_014311:3076519:3093373309337330950101638Ralstonia solanacearum PSI07 chromosome, complete genomeATP-dependent DNA helicase Rep2e-0858.2
NC_012668:442601:4725634725634745782016Vibrio cholerae MJ-1236 chromosome 1, complete sequenceATP-dependent DNA helicase Rep2e-0858.2
NC_011035:933269:9352999352999373142016Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeputative ATP-dependent DNA helicase1e-0858.2
NC_017511:852260:8522608522608542752016Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeputative ATP-dependent DNA helicase1e-0858.2
NC_018868:2867500:2882650288265028846712022Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeATP-dependent DNA helicase Rep2e-0857.8
NC_010741:107370:1097471097471117201974Treponema pallidum subsp. pallidum SS14, complete genomeRep helicase, single-stranded DNA-dependent ATPase2e-0857.8
NC_000919:107373:1097501097501117231974Treponema pallidum subsp. pallidum str. Nichols, complete genomerep helicase, single-stranded DNA-dependent ATPase (rep)2e-0857.8
NC_016844:107382:1097591097591117321974Treponema pallidum subsp. pallidum DAL-1 chromosome, completeUvrD/REP family ATP-dependent DNA helicase2e-0857.8
NC_017268:107387:1097641097641117371974Treponema pallidum subsp. pallidum str. Chicago chromosome,ATP-dependent helicase PcrA2e-0857.8
NC_021508:107384:1097611097611117341974Treponema pallidum subsp. pallidum SS14, complete genomeUvrD/REP family ATP-dependent DNA helicase2e-0857.8
NC_014752:197000:2004822004822026892208Neisseria lactamica ST-640, complete genomeDNA helicase II2e-0857.8
NC_015578:3561838:3561838356183835651973360Treponema primitia ZAS-2 chromosome, complete genomeDNA and RNA helicase2e-0857.8
NC_019978:2293327:2307011230701123091222112Halobacteroides halobius DSM 5150, complete genomeATP-dependent DNA helicase PcrA2e-0857.8
NC_006833:806467:8171338171338190491917Wolbachia endosymbiont strain TRS of Brugia malayi, completeSuperfamily I DNA and RNA helicase, UvrD2e-0857.8
NC_006155:172313:1935641935641955852022Yersinia pseudotuberculosis IP 32953, complete genomeATP-dependent DNA helicase Rep3e-0857.4
NC_010634:166900:1881581881581901792022Yersinia pseudotuberculosis PB1/+, complete genomeATP-dependent DNA helicase Rep3e-0857.4
NC_007651:3719191:3719191371919137217372547Burkholderia thailandensis E264 chromosome I, complete sequenceATP-dependent DNA helicase Rep3e-0857.4
NC_010003:795355:8349168349168370362121Petrotoga mobilis SJ95, complete genomeUvrD/REP helicase3e-0857.4
NC_014376:1842290:1845537184553718478252289Clostridium saccharolyticum WM1 chromosome, complete genomeUvrD/REP helicase3e-0857.4
NC_010981:1053533:1058198105819810601111914Wolbachia pipientis, complete genomehelicase II, UvrD3e-0857.4
NC_015161:927152:9336859336859359882304Deinococcus proteolyticus MRP chromosome, complete genomeUvrD/REP helicase2e-0857.4
NC_012416:979484:9824839824839843991917Wolbachia sp. wRi, complete genomeDNA helicase II2e-0857.4
NC_002978:918000:9223779223779242931917Wolbachia endosymbiont of Drosophila melanogaster, complete genomehelicase II - UvrD/PcrA2e-0857.4
NC_009074:3791232:3815754381575438178412088Burkholderia pseudomallei 668 chromosome I, complete sequenceATP-dependent DNA helicase Rep4e-0857
NC_009076:3876733:3891166389116638932532088Burkholderia pseudomallei 1106a chromosome I, complete sequenceATP-dependent DNA helicase Rep4e-0857
NC_006350:3957454:3977437397743739795242088Burkholderia pseudomallei K96243 chromosome 1, complete sequenceATP-dependent DNA helicase Rep4e-0857
NC_007434:111607:1258451258451280462202Burkholderia pseudomallei 1710b chromosome I, complete sequenceATP-dependent DNA helicase Rep3e-0857
NC_013525:1953920:1968327196832719706662340Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeUvrD/REP helicase6e-0856.2
NC_009075:15017:3059630596323951800Burkholderia pseudomallei 668 chromosome II, complete sequenceUvrD/REP helicase7e-0856.2
NC_014394:942015:9649409649409666371698Gallionella capsiferriformans ES-2 chromosome, complete genomeUvrD/REP helicase1e-0755.5
NC_007912:231817:2322972322972343152019Saccharophagus degradans 2-40, complete genomeATP-dependent DNA helicase Rep1e-0755.5
NC_007205:1:1382913829158652037Candidatus Pelagibacter ubique HTCC1062, complete genomeDNA helicase II1e-0755.1
NC_013520:1860286:1862789186278918653772589Veillonella parvula DSM 2008, complete genomeUvrD/REP helicase1e-0755.1
NC_020829:5382500:5399636539963654016452010Pseudomonas denitrificans ATCC 13867, complete genomeATP-dependent DNA helicase Rep1e-0755.1
NC_010545:619346:6399726399726430403069Corynebacterium urealyticum DSM 7109, complete genomeputative ATP-dependent DNA helicase II2e-0754.7
NC_011761:2785660:2785660278566027877892130Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeDNA helicase II2e-0754.7
NC_011206:2685499:2685499268549926876282130Acidithiobacillus ferrooxidans ATCC 53993, complete genomeUvrD/REP helicase2e-0754.7
NC_019902:1061432:108987610898761090442567Thioalkalivibrio nitratireducens DSM 14787, complete genomeDNA helicase II related protein3e-0754.3
NC_018080:6048516:6099658609965861016672010Pseudomonas aeruginosa DK2 chromosome, complete genomeATP-dependent DNA helicase Rep2e-0754.3
NC_008060:3155133:3199939319993932020262088Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceUvrD/REP helicase2e-0754.3
NC_010520:1614333:1614333161433316163452013Clostridium botulinum A3 str. Loch Maree, complete genomeputative ATP-dependent DNA helicase PcrA2e-0754.3
NC_009256:176403:1774401774401795272088Burkholderia vietnamiensis G4 chromosome 1, complete sequenceUvrD/REP helicase2e-0754.3
NC_007645:713930:7350657350657372302166Hahella chejuensis KCTC 2396, complete genomeSuperfamily I DNA and RNA helicase3e-0753.9
NC_006322:717953:7179537179537201722220Bacillus licheniformis ATCC 14580, complete genomePcrA4e-0753.5
NC_006270:718169:7181697181697203882220Bacillus licheniformis ATCC 14580, complete genomeATP-dependent DNA helicase4e-0753.5
NC_021171:358456:3625633625633647762214Bacillus sp. 1NLA3E, complete genomeATP-dependent DNA helicase4e-0753.5
NC_009441:4449500:4470831447083144731942364Flavobacterium johnsoniae UW101 chromosome, complete genomeUvrD/REP helicase4e-0753.5
NC_015696:610000:6267886267886290162229Francisella sp. TX077308 chromosome, complete genomeATP-dependent DNA helicase UvrD/PcrA5e-0753.1
NC_010718:3039434:3039434303943430416982265Natranaerobius thermophilus JW/NM-WN-LF, complete genomeUvrD/REP helicase5e-0753.1
NC_015660:3518931:3562042356204235642342193Geobacillus thermoglucosidasius C56-YS93 chromosome, completeATP-dependent DNA helicase PcrA6e-0753.1
NC_020209:4549563:4571685457168545736942010Pseudomonas poae RE*1-1-14, complete genomeATP-dependent DNA helicase Rep6e-0752.8
NC_009850:566755:5667555667555688002046Arcobacter butzleri RM4018, complete genomeATP-dependent DNA helicase, UvrD/Rep family9e-0752.4
NC_014221:38000:4901149011523313321Truepera radiovictrix DSM 17093 chromosome, complete genomeUvrD/REP helicase9e-0752.4
NC_015499:1403447:1422710142271014245421833Thermodesulfobium narugense DSM 14796 chromosome, complete genomeUvrD/REP helicase9e-0752.4
NC_009012:3354477:3399024339902434012492226Clostridium thermocellum ATCC 27405, complete genomeATP-dependent DNA helicase PcrA1e-0652
NC_011295:33500:5033750337524272091Coprothermobacter proteolyticus DSM 5265, complete genomeATP-dependent DNA helicase PcrA1e-0652
NC_013204:1135397:1155067115506711575082442Eggerthella lenta DSM 2243, complete genomeUvrD/REP helicase1e-0652
NC_017192:683493:6873356873356893952061Arcobacter sp. L, complete genomeATP-dependent DNA helicase UvrD2e-0651.6
NC_014829:443500:4665374665374688192283Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeATP-dependent DNA helicase PcrA2e-0651.2
NC_019896:2805098:2819463281946328217422280Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein2e-0651.2
NC_017347:2017097:2027227202722720294192193Staphylococcus aureus subsp. aureus T0131 chromosome, completeATP-dependent DNA helicase, PcrA2e-0650.8
NC_009483:1551040:1564229156422915662652037Geobacter uraniireducens Rf4 chromosome, complete genomeUvrD/REP helicase3e-0650.4
NC_013406:6494079:6494079649407964964092331Paenibacillus sp. Y412MC10 chromosome, complete genomeATP-dependent DNA helicase PcrA5e-0650.1
NC_010379:73718:8792687926900192094Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequenceDNA helicase II5e-0649.7
NC_007929:1397989:1403083140308314053172235Lactobacillus salivarius subsp. salivarius UCC118, complete genomeATP-dependent DNA helicase6e-0649.7
NC_012811:317308:3394763394763414762001Methylobacterium extorquens AM1 megaplasmid, complete sequenceputative ATP-dependent DNA helicase6e-0649.7
NC_007963:3553678:3568340356834035703882049Chromohalobacter salexigens DSM 3043, complete genomeATP-dependent DNA helicase Rep9e-0648.9