Pre_GI Gene

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Host: NC_012668 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012668:442601 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
4426014447722172DNA-dependent helicase IIQuickGO ontologyBLASTP
4449104470392130oligopeptidase AQuickGO ontologyBLASTP
447232448071840hypothetical proteinBLASTP
4481774495291353glutathione reductaseQuickGO ontologyBLASTP
4496064508201215hypothetical proteinBLASTP
4508174525051689hypothetical proteinBLASTP
4525154546262112phage IntegraseQuickGO ontologyBLASTP
4555004572541755hypothetical proteinBLASTP
4572574585671311hypothetical proteinBLASTP
4585814596481068patatin-related proteinQuickGO ontologyBLASTP
461228461536309hypothetical proteinBLASTP
4620454636431599deoxycytidylate deaminase-related proteinQuickGO ontologyBLASTP
463896464843948hypothetical proteinBLASTP
465018465956939peptide ABC transporter permeaseQuickGO ontologyBLASTP
465959466936978peptide ABC transporter permeaseQuickGO ontologyBLASTP
4670914686471557peptide ABC transporter substrate-binding proteinQuickGO ontologyBLASTP
4687394704541716cell division transporter ATP-binding protein FtsEQuickGO ontologyBLASTP
47132847140376tRNA-HisQuickGO ontology
47161247168776tRNA-HisQuickGO ontology
47172347179977tRNA-ArgQuickGO ontology
472089472496408cytochrome c5QuickGO ontologyBLASTP
4725634745782016ATP-dependent DNA helicase RepQuickGO ontologyBLASTP