Pre_GI: BLASTP Hits

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Query: NC_007951:1711223:1719447 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 1719447, End: 1720283, Length: 837

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015422:1643000:164300416430041643801798Alicycliphilus denitrificans K601 chromosome, complete genomeIclR family transcriptional regulator2e-34146
NC_012856:798922:802012802012802839828Ralstonia pickettii 12D chromosome 1, complete genometranscriptional regulator, IclR family1e-25117
NC_010170:1219641:122042912204291221235807Bordetella petrii, complete genometranscriptional regulator, IclR family2e-25116
NC_010002:1879220:195224719522471953035789Delftia acidovorans SPH-1, complete genometranscriptional regulator, IclR family1e-24113
NC_008786:2809985:2829239282923928311461908Verminephrobacter eiseniae EF01-2, complete genomeregulatory proteins, IclR2e-2099.8
NC_008786:492363:510295510295511062768Verminephrobacter eiseniae EF01-2, complete genome4e-2098.6
NC_015410:3003417:301342030134203014208789Pseudomonas mendocina NK-01 chromosome, complete genomeIclR family transcriptional regulator2e-1996.3
NC_015677:1460000:147130114713011472017717Ramlibacter tataouinensis TTB310 chromosome, complete genomeIclR family transcriptional regulator5e-1994.7
NC_014657:2236193:225991522599152260712798Caldicellulosiruptor owensensis OL chromosome, complete genometranscriptional regulator, iclr family1e-1894
NC_014392:2311243:231796223179622318795834Caldicellulosiruptor obsidiansis OB47 chromosome, complete genometranscriptional regulator, IclR family1e-1893.6
NC_015949:47414:557195571956513795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator2e-1892.8
NC_015949:428923:438325438325439119795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator2e-1892.8
NC_014721:2043910:204995520499552050749795Caldicellulosiruptor kristjanssonii 177R1B chromosome, completetranscriptional regulator, iclr family3e-1892.4
NC_015724:166246:186530186530187378849Cupriavidus necator N-1 plasmid BB2p, complete sequencetranscriptional regulator IclR family5e-1788.6
NC_007644:416000:418409418409419215807Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family6e-1788.2
NC_014323:625155:639729639729640526798Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein9e-1787.4
NC_015589:2447132:244890124489012449674774Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR4e-1582
NC_016642:1990684:2006015200601520077391725Pseudovibrio sp. FO-BEG1 chromosome, complete genomeSMP-30/Gluconolaconase/LRE-like region4e-1479
NC_014652:163347:170037170037170810774Caldicellulosiruptor hydrothermalis 108 chromosome, completetranscriptional regulator, iclr family8e-1477.8
NC_011830:4645453:465649246564924657265774Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, IclR family9e-1477.4
NC_008593:640000:648290648290649051762Clostridium novyi NT, complete genometranscription regulator (IclR family) BH21373e-1375.9
AC_000091:273325:287628287628288386759Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator5e-1375.1
NC_000913:272071:287628287628288386759Escherichia coli K12, complete genomeCP4-6 prophage; predicted DNA-binding transcriptional regulator5e-1375.1
NC_014121:677799:677799677799678557759Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage predicted DNA-binding transcriptional regulator6e-1374.7
NC_009512:5920960:593641859364185937254837Pseudomonas putida F1, complete genomeregulatory protein, IclR2e-1273.2
NC_016514:506611:509638509638510396759Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YagI2e-1272.8
NC_006510:1995916:201138620113862012162777Geobacillus kaustophilus HTA426, complete genometranscriptional regulator9e-1270.9
NC_008596:3404832:341244134124413413250810Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, IclR family protein, putative1e-1170.5
NC_009142:5519208:552083555208355521626792Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator (IclR family)2e-1169.7
NC_014206:1618988:162671116267111627487777Geobacillus sp. C56-T3 chromosome, complete genomeIclR family transcriptional regulator2e-1169.7
NC_009142:1701000:171626517162651717011747Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, IclR family3e-1169.3
NC_021150:1322000:134735213473521348155804Azotobacter vinelandii CA6, complete genometranscriptional regulatory protein, IclR family3e-1168.9
NC_012560:1322000:134734013473401348143804Azotobacter vinelandii DJ, complete genometranscriptional regulatory protein, IclR family3e-1168.9
NC_007503:1111457:113341811334181134203786Carboxydothermus hydrogenoformans Z-2901, complete genometranscriptional regulator, IclR family2e-1066.6
NC_015957:196000:217055217055217780726Streptomyces violaceusniger Tu 4113 chromosome, complete genomeIclR family transcriptional regulator2e-1066.6
NC_019978:2532640:254798025479802548762783Halobacteroides halobius DSM 5150, complete genometranscriptional regulator2e-1066.2
NC_016590:1183470:118606511860651186964900Burkholderia sp. YI23 chromosome 3, complete sequenceIclR family transcriptional regulator2e-1066.2
NC_015591:1161007:117147111714711172313843Sinorhizobium meliloti AK83 chromosome 3, complete sequenceIclR family transcriptional regulator3e-1065.9
NC_010718:1229355:122935512293551230158804Natranaerobius thermophilus JW/NM-WN-LF, complete genometranscriptional regulator, IclR family4e-1065.5
NC_002678:5060670:507867250786725079481810Mesorhizobium loti MAFF303099, complete genomehypothetical protein4e-1065.5
NC_007384:307013:325878325878326759882Shigella sonnei Ss046, complete genome6e-1064.7
NC_003888:8594500:860579786057978606564768Streptomyces coelicolor A3(2), complete genometranscriptional regulator8e-1064.3
NC_014550:3534000:355058135505813551378798Arthrobacter arilaitensis Re117, complete genomeIclR family transcriptional regulator1e-0963.9
NC_007948:360199:390220390220391011792Polaromonas sp. JS666, complete genometranscriptional regulator, IclR family1e-0963.9
NC_010473:247429:2617322617322639362205Escherichia coli str. K-12 substr. DH10B, complete genome2e-0963.5
NC_010473:1384000:138625413862541387201948Escherichia coli str. K-12 substr. DH10B, complete genomeDNA-binding transcriptional activator, 3HPP-binding2e-0963.5
NC_015565:2027279:204943020494302050236807Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeIclR family transcriptional regulator2e-0963.2
NC_005126:142500:146503146503147273771Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-0963.2
NC_017192:683493:700449700449701183735Arcobacter sp. L, complete genometranscriptional regulator2e-0963.2
NC_016584:593954:606783606783607556774Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator2e-0962.8
NC_009921:3384116:340073634007363401452717Frankia sp. EAN1pec, complete genometranscriptional regulator, IclR family2e-0962.8
NC_016602:2037162:205856720585672059385819Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceDNA-binding protein transcriptional activator4e-0962.4
NC_010170:1219641:121964112196411220426786Bordetella petrii, complete genometranscriptional regulator, IclR family4e-0962.4
NC_006087:28490:625956259563383789Leifsonia xyli subsp. xyli str. CTCB07, complete genometranscriptional regulator, IclR family3e-0962.4
NC_020134:845164:851861851861852637777Clostridium stercorarium subsp. stercorarium DSM 8532, completepectin degradation repressor protein KdgR3e-0962.4
NC_010997:830500:836841836841837644804Rhizobium etli CIAT 652 plasmid pC, complete sequenceputative transcriptional regulator protein, IclR family4e-0962
NC_010552:2454776:245477624547762455564789Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, IclR family5e-0962
NC_009485:1222697:124249912424991243314816Bradyrhizobium sp. BTAi1 chromosome, complete genomeIclR family transcriptional regulator5e-0961.6
NC_007963:317291:335808335808336599792Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, IclR family5e-0961.6
NC_003888:6853107:686865768686576869469813Streptomyces coelicolor A3(2), complete genometranscriptional regulator for glyoxylate bypass5e-0961.6
NC_015379:2505233:251805125180512518803753Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transcription factor, IclR family7e-0961.2
NC_014931:5573942:559204755920475592841795Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, IclR family7e-0961.2
NC_017955:3057592:306076030607603061566807Modestobacter marinus, complete genomeIclR family transcriptional regulator8e-0961.2
NC_003063:304962:329125329125329955831Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein2e-0859.7
NC_003305:1743939:174486317448631745633771Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, IclR family2e-0859.7
NC_015732:684000:686748686748687509762Spirochaeta caldaria DSM 7334 chromosome, complete genomeIclR family transcriptional regulator3e-0859.3
NC_015589:2281054:228220522822052283017813Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR4e-0858.5
NC_018691:198909:215686215686216465780Alcanivorax dieselolei B5 chromosome, complete genomeBeta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family6e-0858.2
NC_012691:1250385:127547512754751276257783Tolumonas auensis DSM 9187, complete genometranscriptional regulator, IclR family6e-0858.2
NC_008699:2260606:228254222825422283318777Nocardioides sp. JS614, complete genomeregulatory proteins, IclR7e-0858.2
NC_015563:5289875:531011553101155310942828Delftia sp. Cs1-4 chromosome, complete genomeIclR family transcriptional regulator2e-0757
NC_012988:731790:737319737319738095777Methylobacterium extorquens DM4, complete genomeDNA-binding transcriptional repressor, IclR family2e-0757
NC_014623:1633889:163496616349661635784819Stigmatella aurantiaca DW4/3-1 chromosome, complete genometranscriptional regulator1e-0757
NC_019673:8114376:812535081253508126270921Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, IclR family2e-0756.2
NC_004337:3590323:372325937232593724107849Shigella flexneri 2a str. 301, complete genomeputative regulator2e-0756.2
NC_008148:792610:805439805439806221783Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, IclR family3e-0755.8
NC_013510:5394432:540096854009685401714747Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, IclR family3e-0755.8
NC_018581:3646489:365874036587403659486747Gordonia sp. KTR9 chromosome, complete genomeTranscriptional regulator3e-0755.8
NC_013929:5850599:5866255586625558680181764Streptomyces scabiei 87.22 chromosome, complete genomeIclR family transcriptional regulator4e-0755.5
NC_021171:1661923:168295816829581683677720Bacillus sp. 1NLA3E, complete genomeIclR family transcriptional regulator5e-0755.1
NC_007953:938346:955359955359956207849Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, IclR family5e-0755.1
NC_014299:82584:117884117884118654771Halalkalicoccus jeotgali B3 plasmid 2, complete sequenceArcR family transcription regulator7e-0754.7
NC_017986:5605197:563030556303055631078774Pseudomonas putida ND6 chromosome, complete genomeregulatory protein IclR1e-0654.3
NC_016947:1480282:148352714835271484252726Mycobacterium intracellulare MOTT-02 chromosome, complete genomeregulatory protein, IclR1e-0654.3
NC_013743:505842:527387527387528151765Haloterrigena turkmenica DSM 5511, complete genometranscriptional regulator, IclR family8e-0754.3
NC_016641:2476634:247877124787712479514744Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator2e-0653.1
NC_012880:2425330:243403424340342434825792Dickeya dadantii Ech703, complete genometranscriptional regulator, IclR family3e-0652.4
NC_009468:38112:599365993660745810Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequenceregulatory protein, IclR4e-0652
NC_016860:4024000:403866040386604039412753Salmonella enterica subsp. enterica serovar Typhimurium strputative HTH-type transcriptional regulator yfaX5e-0652
NC_012912:2216749:223158522315852232376792Dickeya zeae Ech1591, complete genometranscriptional regulator, IclR family5e-0651.6
NC_013524:314814:320777320777321589813Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genometranscriptional regulator, IclR family9e-0650.8
NC_008705:1839983:184123518412351841939705Mycobacterium sp. KMS, complete genomeregulatory proteins, IclR1e-0550.8
NC_008705:1839983:185465018546501855354705Mycobacterium sp. KMS, complete genomeregulatory proteins, IclR1e-0550.8
NC_009077:1725683:177390317739031774607705Mycobacterium sp. JLS, complete genomeregulatory proteins, IclR1e-0550.8