Pre_GI: BLASTP Hits

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Query: NC_006511:1243817:1259879 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 1259879, End: 1260270, Length: 392

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002655:301940:306856306856307446591Escherichia coli O157:H7 EDL933, complete genomeDNA invertase from prophage CP-933H3e-29127
NC_013008:306953:310772310772311326555Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDNA invertase from prophage CP-933H3e-29126
NC_011353:305820:310772310772311326555Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeDNA-invertase3e-29126
NC_002695:301939:306891306891307445555Escherichia coli O157:H7 str. Sakai, complete genomeDNA-invertase3e-29126
NC_000913:1188999:120890812089081209462555Escherichia coli K12, complete genomee14 prophage; site-specific DNA recombinase4e-29126
AC_000091:1191353:121126212112621211816555Escherichia coli W3110 DNA, complete genomesite-specific DNA recombinase4e-29126
NC_012880:3529017:354256735425673543136570Dickeya dadantii Ech703, complete genomeResolvase domain protein1e-25114
NC_007613:1353500:137085113708511371450600Shigella boydii Sb227, complete genomeputative DNA-invertase5e-25113
NC_007712:1182518:119172311917231192313591Sodalis glossinidius str. 'morsitans', complete genomephage DNA-invertase4e-1993.2
NC_004349:3938:167331673317290558Shewanella oneidensis MR-1 plasmid pMR-1, complete sequenceISSod9, DNA-invertase4e-1993.2
NC_010102:2862178:287925728792572879829573Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-1992.8
NC_011094:2791719:282196128219612822533573Salmonella enterica subsp. enterica serovar Schwarzengrund strDNA-invertase hin6e-1992.8
NC_006905:2857699:286979628697962870368573Salmonella enterica subsp. enterica serovar Choleraesuis strH inversion: regulation of flagellar gene expression by site-specific inversion of DNA6e-1992.8
NC_003197:2894344:291484229148422915414573Salmonella typhimurium LT2, complete genomeDNA-invertase Hin6e-1992.8
NC_016856:2896630:293507729350772935649573Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SDNA-invertase Hin6e-1992.8
NC_016860:2917910:293840829384082938980573Salmonella enterica subsp. enterica serovar Typhimurium strDNA-invertase Hin6e-1992.8
NC_016863:2844883:288333028833302883902573Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA-invertase Hin6e-1992.8
NC_011080:2870428:289148128914812892047567Salmonella enterica subsp. enterica serovar Newport str. SL254,DNA-invertase hin6e-1992.8
NC_012125:2826624:285008028500802850628549Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA-invertase Hin6e-1992.8
NC_011083:2847318:288963028896302890193564Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,DNA-invertase hin6e-1992.8
NC_011283:2836000:289252528925252893121597Klebsiella pneumoniae 342 chromosome, complete genomeDNA-invertase hin1e-1891.7
NC_018080:3055358:307262430726243073181558Pseudomonas aeruginosa DK2 chromosome, complete genomeresolvase domain-containing protein1e-1891.7
NC_013850:2182337:224002122400212240590570Klebsiella variicola At-22 chromosome, complete genomeResolvase domain protein2e-1890.9
NC_020181:5217000:524391752439175244486570Enterobacter aerogenes EA1509E, complete genomeDNA-invertase3e-1890.5
NC_008345:4107847:413391541339154134481567Shewanella frigidimarina NCIMB 400, complete genomeResolvase, N-terminal domain protein9e-1889
NC_011147:2713937:272620127262012726695495Salmonella enterica subsp. enterica serovar Paratyphi A str3e-1787
NC_006511:2718401:273066527306652731159495Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC3e-1787
NC_008786:1553833:156447815644781565035558Verminephrobacter eiseniae EF01-2, complete genomeResolvase, N-terminal domain5e-1786.3
NC_020063:2531643:254405725440572544623567Enterobacteriaceae bacterium strain FGI 57, complete genomesite-specific recombinase, DNA invertase Pin3e-1683.6
NC_015853:1:101731017310730558Acidithiobacillus caldus SM-1 plasmid pLAtc2, complete sequencerecombinase1e-1582
NC_008541:472643:491091491091491672582Arthrobacter sp. FB24 chromosome 1, complete sequenceResolvase4e-1476.6
NC_010511:7400255:741977274197727420377606Methylobacterium sp. 4-46 chromosome, complete genomeresolvase domain-containing protein2e-1374.3
NC_007507:101887:112277112277112843567Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,Site-specific recombinase8e-1372.4
NC_003902:1858349:190068919006891901255567Xanthomonas campestris pv. campestris str. ATCC 33913, completeinvertase/recombinase protein8e-1372.4
NC_007086:3118116:313857331385733139139567Xanthomonas campestris pv. campestris str. 8004, complete genomeinvertase/recombinase protein8e-1372.4
NC_017208:694500:711042711042711614573Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeDNA integration/recombination/inversion protein8e-1372.4
NC_015259:3902136:391328139132813913880600Polymorphum gilvum SL003B-26A1 chromosome, complete genomeInvertase recombinase-like protein7e-1372.4
NC_011662:2402408:242481724248172425392576Thauera sp. MZ1T, complete genomeResolvase domain protein1e-1272
NC_015376:2061990:206887020688702069424555Burkholderia gladioli BSR3 chromosome chromosome 2, completeResolvase domain protein4e-1270.1
NC_015671:255808:266131266131266709579Cellvibrio gilvus ATCC 13127 chromosome, complete genomeResolvase domain-containing protein4e-1270.1
NC_014151:370882:380301380301380930630Cellulomonas flavigena DSM 20109 chromosome, complete genomeResolvase domain protein4e-1270.1
NC_015859:3126500:313540431354043135973570Corynebacterium variabile DSM 44702 chromosome, complete genometransposase for insertion sequence element4e-1270.1
NC_015859:1536439:154704015470401547528489Corynebacterium variabile DSM 44702 chromosome, complete genomeDNA invertase6e-1269.7
NC_015859:1099919:111698811169881117557570Corynebacterium variabile DSM 44702 chromosome, complete genomeDNA invertase5e-1269.7
NC_009656:5505413:550483855048385505416579Pseudomonas aeruginosa PA7 chromosome, complete genomeDNA-invertase8e-1268.9
NC_016938:193000:195050195050195646597Melissococcus plutonius DAT561 chromosome 1, complete genomeDNA-invertase8e-1268.9
NC_012857:1097400:111612511161251116718594Ralstonia pickettii 12D chromosome 2, complete genomeResolvase domain protein8e-1268.9
NC_011662:2374955:238635323863532386928576Thauera sp. MZ1T, complete genomeResolvase domain protein1e-1168.6
NC_008268:3335035:334145233414523341988537Rhodococcus sp. RHA1, complete genomeresolvase2e-1167.8
NC_010512:866932:878729878729879316588Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceResolvase domain3e-1167.4
NC_008347:1636660:164962816496281650176549Maricaulis maris MCS10, complete genomeResolvase4e-1166.6
NC_011777:161505:165657165657166208552Bacillus cereus AH820 plasmid pAH820_272, complete sequenceresolvase4e-1166.6
NC_010512:866932:877112877112877666555Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceResolvase domain4e-1166.6
NC_014550:889500:914521914521915093573Arthrobacter arilaitensis Re117, complete genomeputative resolvase9e-1165.5
NC_015259:673662:684998684998685570573Polymorphum gilvum SL003B-26A1 chromosome, complete genomeInvertase recombinase-like protein1e-1065.5
NC_009720:583060:605232605232605843612Xanthobacter autotrophicus Py2, complete genomeresolvase domain-containing protein1e-1065.1
NC_010682:2642269:265589026558902656480591Ralstonia pickettii 12J chromosome 1, complete sequenceResolvase domain1e-1065.1
NC_008752:2936933:296832429683242969247924Acidovorax avenae subsp. citrulli AAC00-1, complete genomeResolvase, N-terminal domain2e-1064.7
NC_008752:3217695:323449732344973235420924Acidovorax avenae subsp. citrulli AAC00-1, complete genomeResolvase, N-terminal domain2e-1064.7
NC_008740:443274:465549465549466109561Marinobacter aquaeolei VT8, complete genomeResolvase, N-terminal domain2e-1064.7
NC_007507:101887:117717117717118640924Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,Tn5045 resolvase2e-1064.7
NC_013730:5877879:588849758884975889102606Spirosoma linguale DSM 74, complete genomeResolvase domain protein2e-1064.3
NC_010995:1417329:143561314356131436203591Cellvibrio japonicus Ueda107, complete genomeinvertase/recombinase like protein2e-1064.3
NC_013037:2851940:285981428598142860419606Dyadobacter fermentans DSM 18053, complete genomeResolvase domain2e-1064.3
NC_010611:240839:255477255477255962486Acinetobacter baumannii ACICU, complete genomesite-specific recombinase, DNA invertase Pin protein4e-1063.5
NC_011586:268927:317739317739318224486Acinetobacter baumannii AB0057 chromosome, complete genomeinvertase/recombinase protein4e-1063.5
NC_008380:4968492:497249549724954973052558Rhizobium leguminosarum bv. viciae 3841, complete genomeputative DNA-invertase from lambdoid prophage E143e-1063.5
NC_013730:4399643:441023544102354410807573Spirosoma linguale DSM 74, complete genome3e-1063.5
NC_015942:1047576:106963210696321070207576Acidithiobacillus ferrivorans SS3 chromosome, complete genomeResolvase domain-containing protein5e-1063.2
NC_015259:734795:741517741517742083567Polymorphum gilvum SL003B-26A1 chromosome, complete genomeInvertase recombinase-like protein5e-1063.2
NC_006873:1:129129722594Bacteroides fragilis NCTC 9343 plasmid pBF9343, complete sequenceputative resolvase/DNA invertase7e-1062.8
NC_007626:3522265:359093035909303591538609Magnetospirillum magneticum AMB-1, complete genomeSite-specific recombinase7e-1062.8
NC_007626:3393940:342955834295583430121564Magnetospirillum magneticum AMB-1, complete genomeSite-specific recombinase7e-1062.4
NC_009256:277020:297910297910298500591Burkholderia vietnamiensis G4 chromosome 1, complete sequenceresolvase domain-containing protein8e-1062.4
NC_012856:2266187:227986322798632280453591Ralstonia pickettii 12D chromosome 1, complete genomeResolvase domain protein9e-1062.4
NC_009074:2914053:292983329298332930444612Burkholderia pseudomallei 668 chromosome I, complete sequenceputative site-specific recombinases, DNA invertase Pin1e-0962
NC_013446:4281250:429116142911614291727567Comamonas testosteroni CNB-2, complete genomeResolvase-like protein1e-0962
NC_009656:115390:116395116395117324930Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein1e-0961.6
NC_008740:257434:278266278266278829564Marinobacter aquaeolei VT8, complete genomeResolvase, N-terminal domain2e-0961.2
NC_011992:863174:874365874365874949585Acidovorax ebreus TPSY, complete genomeResolvase domain protein2e-0961.2
NC_006350:1938631:197529319752931975937645Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative recombinase2e-0960.8
NC_008712:250240:255446255446256075630Arthrobacter aurescens TC1 plasmid TC1, complete sequenceinvertase recombinase-like protein2e-0960.8
NC_015730:1918000:194096019409601941565606Roseobacter litoralis Och 149 chromosome, complete genomeputative resolvase/recombinase4e-0960.5
NC_008380:2287327:228814422881442288707564Rhizobium leguminosarum bv. viciae 3841, complete genomeputative DNA-invertase3e-0960.5
NC_019771:2461000:247410324741032474672570Anabaena cylindrica PCC 7122, complete genomeResolvase domain protein3e-0960.5
NC_019774:74131:833278332783896570Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequenceResolvase domain protein3e-0960.5
NC_008782:752686:758289758289758882594Acidovorax sp. JS42, complete genomeResolvase, N-terminal domain4e-0960.1
NC_018720:176306:185453185453186049597Bifidobacterium asteroides PRL2011 chromosome, complete genomeTn3 family transposase5e-0960.1
NC_002516:4321000:433032143303214330896576Pseudomonas aeruginosa PAO1, complete genomeprobable DNA invertase5e-0959.7
NC_017955:3731480:378332137833213784052732Modestobacter marinus, complete genomeDNA-invertase hin6e-0959.7
NC_017986:1885613:188561318856131886236624Pseudomonas putida ND6 chromosome, complete genomeTniR protein8e-0959.3
NC_009350:137645:149139149139149753615Aeromonas salmonicida subsp. salmonicida A449 plasmid 5, completeTniR protein8e-0959.3
NC_017986:1862408:188038418803841881025642Pseudomonas putida ND6 chromosome, complete genomeputative resolvase8e-0959.3
NC_014550:3377834:342306334230633423647585Arthrobacter arilaitensis Re117, complete genomeputative resolvase7e-0959.3
NC_010815:40357:550125501255566555Geobacter lovleyi SZ plasmid pGLOV01, complete sequence7e-0959.3
NC_013722:1816561:185500818550081855589582Xanthomonas albilineans, complete genomeputative invertase/recombinase protein8e-0958.9
NC_016616:2644883:264743926474392648053615Dechlorosoma suillum PS chromosome, complete genomesite-specific recombinase, DNA invertase Pin9e-0958.9
NC_017986:1862408:187575318757531876328576Pseudomonas putida ND6 chromosome, complete genomeputative DNA invertase9e-0958.9
NC_006350:1938631:197874719787471979340594Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative invertase1e-0858.9
NC_007434:2386036:240497924049792405824846Burkholderia pseudomallei 1710b chromosome I, complete sequenceDNA invertase2e-0858.2
NC_017262:1913302:191756919175691918165597Zymomonas mobilis subsp. mobilis ATCC 10988 chromosome, completeresolvase domain-containing protein2e-0857.8
NC_006526:1472781:147278114727811473377597Zymomonas mobilis subsp. mobilis ZM4, complete genometransposase2e-0857.8
NC_007973:3240866:326311432631143263728615Ralstonia metallidurans CH34 chromosome 1, complete sequenceResolvase-like protein2e-0857.8
NC_011667:1:105081050811122615Thauera sp. MZ1T plasmid pTha01, complete sequenceResolvase domain protein2e-0857.4
NC_013791:875224:877866877866878429564Bacillus pseudofirmus OF4 chromosome, complete genomeresolvase3e-0857.4
NC_009380:4702815:470481947048194705493675Salinispora tropica CNB-440 chromosome, complete genomeresolvase domain-containing protein3e-0857.4
NC_015160:3556114:355965335596533560171519Odoribacter splanchnicus DSM 20712 chromosome, complete genomeResolvase domain3e-0857
NC_009342:135500:153413153413154030618Corynebacterium glutamicum R chromosome, complete genomehypothetical protein4e-0857
NC_008044:1736000:175037117503711751012642Silicibacter sp. TM1040, complete genomeResolvase-like5e-0856.6
NC_008711:424482:432246432246432848603Arthrobacter aurescens TC1, complete genomesite-specific recombinase, resolvase family4e-0856.6
NC_012660:5793200:580082258008225801457636Pseudomonas fluorescens SBW25 chromosome, complete genomeputative DNA invertase6e-0856.2
NC_015730:1107840:112029511202951120915621Roseobacter litoralis Och 149 chromosome, complete genomebacteriophage DNA-invertase8e-0855.8
NC_009092:1127000:114712611471261147743618Shewanella loihica PV-4, complete genomeResolvase, N-terminal domain1e-0755.1
NC_007512:944941:972563972563973159597Pelodictyon luteolum DSM 273, complete genomeinvertase/recombinase like protein1e-0755.1
NC_008752:2615360:262082026208202621413594Acidovorax avenae subsp. citrulli AAC00-1, complete genomeResolvase, N-terminal domain2e-0754.7
NC_005230:32647:418454184542492648Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequenceresolvase3e-0754.3
NC_008752:3955327:396479339647933965386594Acidovorax avenae subsp. citrulli AAC00-1, complete genomeResolvase, N-terminal domain2e-0754.3
NC_009049:2131017:214715121471512147708558Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequenceResolvase, N-terminal domain2e-0754.3
NC_013172:2877722:289038928903892890976588Brachybacterium faecium DSM 4810, complete genomesite-specific recombinase, DNA invertase Pin3e-0753.9
NC_011757:4293000:431121343112134311773561Methylobacterium chloromethanicum CM4, complete genomeResolvase domain3e-0753.9
NC_009092:4585784:459390045939004594484585Shewanella loihica PV-4, complete genomeResolvase, N-terminal domain4e-0753.5
NC_006663:1:504250425620579Staphylococcus epidermidis RP62A plasmid pSERP, complete sequencesite-specific recombinase, resolvase family5e-0753.1
NC_013893:1723939:172458317245831725176594Staphylococcus lugdunensis HKU09-01 chromosome, complete genomeResolvase/integrase Bin5e-0753.1
NC_010410:3606826:362917936291793629838660Acinetobacter baumannii AYE, complete genomeResolvase7e-0752.8
NC_011586:268927:307401307401308060660Acinetobacter baumannii AB0057 chromosome, complete genomeresolvase IS267e-0752.8
NC_017387:247462:256497256497257156660Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeresolvase IS267e-0752.8
NC_018000:1207231:120989412098941210463570Sinorhizobium fredii USDA 257 chromosome, complete genometransposon Tn552 DNA-invertase BinR6e-0752.8
NC_020409:621792:662491662491663117627Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completehypothetical protein1e-0652
NC_014034:3111981:312382431238243124375552Rhodobacter capsulatus SB1003 chromosome, complete genomeDNA-invertase1e-0651.6
NC_015563:4414854:441993344199334420547615Delftia sp. Cs1-4 chromosome, complete genomeResolvase domain-containing protein2e-0651.2
NC_017051:878514:892484892484892858375Rickettsia prowazekii str. Dachau chromosome, complete genomeTn5501/Tn5503/Tn4662 resolvase4e-0650.4
NC_016624:112919:112919112919113497579Azospirillum lipoferum 4B plasmid AZO_p5, complete sequencesite-specific DNA recombinase, ISAli20, Tn3 family5e-0649.7