Pre_GI: BLASTP Hits

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Query: NC_004663:4373902:4376689 Bacteroides thetaiotaomicron VPI-5482, complete genome

Start: 4376689, End: 4377198, Length: 510

Host Lineage: Bacteroides thetaiotaomicron; Bacteroides; Bacteroidaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This is the type strain for this organism and was isolated from the feces of a healthy adult. Common gastrointestinal bacterium. This group of microbes constitute the most abundant members of the intestinal microflora of mammals. Typically they are symbionts, but they can become opportunistic pathogens in the peritoneal (intra-abdominal) cavity. Breakdown of complex plant polysaccharides such as cellulose and hemicellulose and host-derived polysaccharides such as mucopolysaccharides is aided by the many enzymes these organisms produce. Bacteroides thetaiotaomicron is one of the two major Bacteroidesspecies found in the intestine. This organism has been used in studies on gut microflora composition and succession.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015311:720631:726166726166726678513Prevotella denticola F0289 chromosome, complete genomeSigma-70 region 24e-53206
NC_009614:1071548:108075110807511081263513Bacteroides vulgatus ATCC 8482 chromosome, complete genomeRNA polymerase ECF-type sigma factor6e-2199.8
NC_009615:3581619:358324535832453583757513Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor4e-1994
NC_016776:1470596:149332214933221493837516Bacteroides fragilis 638R, complete genomeputative RNA polymerase ECF-type sigma factor5e-1787
NC_015966:1145974:116775911677591168322564Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit5e-1477
NC_008435:854576:876605876605877288684Rhodopseudomonas palustris BisA53, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-1477
NC_011830:3369282:338259733825973383103507Desulfitobacterium hafniense DCB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-1476.3
NC_019897:329945:346389346389346979591Thermobacillus composti KWC4 chromosome, complete genomesigma-70 family RNA polymerase sigma factor2e-1375.1
NC_015436:440033:442515442515443042528Spirochaeta coccoides DSM 17374 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1375.1
NC_013943:1019213:103299510329951033477483Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-1374.7
NC_009142:267550:269255269255269797543Saccharopolyspora erythraea NRRL 2338, complete genomeRNA polymerase sigma-70 factor, ECF family2e-1272
NC_012673:1540000:154720815472081547783576Exiguobacterium sp. AT1b, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1271.6
NC_007907:2306561:230812823081282308652525Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-1271.2
NC_015172:1075592:107559210755921076101510Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1271.2
NC_018665:139646:154042154042154605564Exiguobacterium antarcticum B7 chromosome, complete genomeRNA polymerase sigma factor SigW8e-1269.7
NC_009012:2953638:301233430123343012897564Clostridium thermocellum ATCC 27405, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1168.6
NC_016609:4233701:423984042398404240400561Niastella koreensis GR20-10 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit4e-1167.4
NC_008554:1623041:164580616458061646414609Syntrophobacter fumaroxidans MPOB, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-1167
NC_019897:3810000:385687138568713857380510Thermobacillus composti KWC4 chromosome, complete genomeSigM family RNA polymerase sigma factor8e-1166.2
NC_010556:141374:154091154091154654564Exiguobacterium sibiricum 255-15, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-1166.2
NC_012660:1579204:161309716130971613678582Pseudomonas fluorescens SBW25 chromosome, complete genomeRNA polymerase sigma factor AlgU3e-1064.3
NC_004193:1335626:133948713394871340014528Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase ECF-type sigma factor5e-1063.5
NC_011567:139598:151917151917152480564Anoxybacillus flavithermus WK1, complete genomeDNA-directed RNA polymerase specialized sigma subunit6e-1063.5
NC_007677:241846:245884245884246468585Salinibacter ruber DSM 13855, complete genomepossible sigma-70 factor, ECF subfamily, putative6e-1063.5
NC_010995:2547164:254810525481052548695591Cellvibrio japonicus Ueda107, complete genomeRNA polymerase sigma-H factor (Sigma-30)8e-1063.2
NC_004663:3801071:380107138010713801646576Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor7e-1063.2
NC_007298:2170181:217566021756602176259600Dechloromonas aromatica RCB, complete genomeRNA polymerase sigma-70 factor7e-1063.2
NC_008536:5192235:520608052060805206640561Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-1063.2
NC_009615:1469642:151497515149751515514540Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor1e-0962.4
NC_003909:1205605:122684212268421227327486Bacillus cereus ATCC 10987, complete genomeRNA polymerase sigma-70 factor2e-0962
NC_014032:269844:274798274798275382585Salinibacter ruber M8 chromosome, complete genomeRNA polymerase sigma factor2e-0961.6
NC_014829:178000:186205186205186768564Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0961.6
NC_016935:4038265:405515440551544056110957Paenibacillus mucilaginosus 3016 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0961.2
NC_012914:5225609:523278752327875233743957Paenibacillus sp. JDR-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0961.2
NC_012483:1567253:158365615836561584234579Acidobacterium capsulatum ATCC 51196, complete genomeRNA polymerase sigma-70 factor, ECF subfamily6e-0960.5
NC_021184:3149000:315104331510433151618576Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family6e-0960.1
NC_007760:645016:645016645016645522507Anaeromyxobacter dehalogenans 2CP-C, complete genomesigma-24 (FecI-like)6e-0960.1
NC_013730:6901725:691767169176716918270600Spirosoma linguale DSM 74, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0959.7
NC_016631:3114000:313063631306363131205570Granulicella mallensis MP5ACTX8 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit9e-0959.7
NC_012704:1747539:176790617679061768508603Corynebacterium kroppenstedtii DSM 44385, complete genomeECF-family sigma factor H8e-0959.7
NC_003450:788000:804408804408805028621Corynebacterium glutamicum ATCC 13032, complete genomeRNA polymerase sigma factor RpoE7e-0959.7
NC_009342:951761:964659964659965279621Corynebacterium glutamicum R chromosome, complete genomeRNA polymerase sigma factor RpoE7e-0959.7
NC_016631:5378810:537881053788105379649840Granulicella mallensis MP5ACTX8 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-0859.3
NC_020054:1335699:135291713529171353507591Fibrella aestuarina BUZ 2 drat genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0859.3
NC_016641:5926000:592727759272775928050774Paenibacillus terrae HPL-003 chromosome, complete genomeDNA-directed RNA polymerase subunit sigma1e-0859.3
NC_016609:6136411:615649361564936157086594Niastella koreensis GR20-10 chromosome, complete genomeRNA polymerase, sigma subunit, SigX1e-0859.3
NC_007907:2995889:301049930104993011068570Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-0859.3
NC_010505:5967324:597965759796575980331675Methylobacterium radiotolerans JCM 2831, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0858.9
NC_020272:3706722:372792437279243728487564Bacillus amyloliquefaciens IT-45, complete genomeRNA polymerase sigma factor SigW1e-0858.9
NC_020410:198000:198744198744199307564Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeRNA polymerase ECF(Extracytoplasmic function)-type sigma factor W1e-0858.9
NC_014551:199500:199660199660200223564Bacillus amyloliquefaciens DSM 7, complete genomeRNA polymerase ECF(extracytoplasmic function)-type sigma factor W1e-0858.9
NC_017188:177500:177639177639178202564Bacillus amyloliquefaciens TA208 chromosome, complete genomeRNA polymerase sigma factor SigW1e-0858.9
NC_017190:182449:182449182449183012564Bacillus amyloliquefaciens LL3 chromosome, complete genomeRNA polymerase sigma factor1e-0858.9
NC_017191:183500:183549183549184112564Bacillus amyloliquefaciens XH7 chromosome, complete genomeRNA polymerase sigma factor SigW1e-0858.9
NC_016582:5769080:579130957913095791824516Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative sigma factor2e-0858.5
NC_009438:1282022:129610312961031296681579Shewanella putrefaciens CN-32 chromosome, complete genomeRNA polymerase sigma factor RpoE2e-0858.5
NC_008750:3435495:343614234361423436720579Shewanella sp. W3-18-1, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0858.5
NC_013730:4399643:441409444140944414645552Spirosoma linguale DSM 74, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0858.2
NC_016627:689406:701226701226701768543Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor8e-0856.6
NC_004193:241480:250169250169250732564Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase sigma-70 factor9e-0856.2
NC_016627:4270949:428432542843254284810486Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor1e-0756.2
NC_015660:1918307:191991019199101920395486Geobacillus thermoglucosidasius C56-YS93 chromosome, completeECF subfamily RNA polymerase sigma-24 subunit1e-0756.2
NC_015497:4683741:470916247091624709653492Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0755.8
NC_011992:1318691:131869113186911319206516Acidovorax ebreus TPSY, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0755.8
NC_016627:762000:776639776639777193555Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor2e-0755.5
NC_010170:3908500:391055939105593911074516Bordetella petrii, complete genomeRNA polymerase sigma factor2e-0755.5
NC_009012:3224000:322403932240393224593555Clostridium thermocellum ATCC 27405, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0755.5
NC_014318:1537732:154374515437451544242498Amycolatopsis mediterranei U32 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor2e-0755.1
NC_016830:2168523:218617921861792186661483Pseudomonas fluorescens F113 chromosome, complete genomeprotein FpvI2e-0755.1
NC_013173:1712138:173775417377541738296543Desulfomicrobium baculatum DSM 4028, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0755.1
NC_010511:7553703:757897775789777579660684Methylobacterium sp. 4-46 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor3e-0754.7
NC_015953:4908069:492497149249714925813843Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0754.7
NC_014098:2225174:224373822437382244325588Bacillus tusciae DSM 2912 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0754.7
NC_012214:1117325:114286111428611143436576Erwinia pyrifoliae Ep1/96, complete genomeRNA polymerase sigma E4e-0754.3
NC_014931:1642179:165110916511091651702594Variovorax paradoxus EPS chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0754.3
NC_014815:5888934:589354558935455894543999Micromonospora sp. L5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily4e-0754.3
NC_014650:1893758:189647118964711896956486Geobacillus sp. Y4.1MC1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0754.3
NC_008686:1592073:161056416105641611091528Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily4e-0753.9
NC_014033:1664500:168220716822071682704498Prevotella ruminicola 23 chromosome, complete genomeECF family RNA polymerase sigma-70 factor4e-0753.9
NC_015690:3477573:349535034953503496201852Paenibacillus mucilaginosus KNP414 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit5e-0753.9
NC_013132:2523780:254108925410892541700612Chitinophaga pinensis DSM 2588, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0753.9
NC_010172:1522707:154378715437871544350564Methylobacterium extorquens PA1, complete genomeRNA polymerase sigma factor, sigma-70 family6e-0753.5
NC_015164:1812439:182623318262331826790558Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0753.5
NC_014655:2782707:278688527868852787409525Leadbetterella byssophila DSM 17132 chromosome, complete genomeRNA polymerase, sigma subunit, ecf family5e-0753.5
NC_015277:5211779:522919252291925229782591Sphingobacterium sp. 21 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-0753.1
NC_020054:4028444:403406440340644034615552Fibrella aestuarina BUZ 2 drat genomeRNA polymerase sigma-E factor Sigma-248e-0753.1
NC_014150:1006000:102603910260391026611573Brachyspira murdochii DSM 12563 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-0753.1
NC_003155:5253923:527524952752495275962714Streptomyces avermitilis MA-4680, complete genomeRNA polymerase sigma-70 factor9e-0753.1
NC_013929:5135285:515159451515945152304711Streptomyces scabiei 87.22 chromosome, complete genomesigma factor1e-0652.8
NC_006510:1731939:175291017529101753395486Geobacillus kaustophilus HTA426, complete genomeDNA-directed RNA polymerase ECF-type sigma factor1e-0652.8
NC_018524:2338000:2359976235997623628822907Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeRNA polymerase sigma factor, sigma-70 family protein9e-0752.8
NC_012560:2546000:254609625460962546800705Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family1e-0652.4
NC_021150:2546000:254610825461082546812705Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family1e-0652.4
NC_013730:1572889:158410515841051584656552Spirosoma linguale DSM 74, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.4
NC_014364:4416467:442893744289374429710774Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.4
NC_016109:62000:940019400194678678Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor1e-0652.4
NC_016109:8664974:868860186886018689278678Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor1e-0652.4
NC_017080:1194199:119784911978491198454606Phycisphaera mikurensis NBRC 102666, complete genomeRNA polymerase ECF-type sigma factor2e-0652
NC_007298:2769525:279111027911102791682573Dechloromonas aromatica RCB, complete genomeRNA polymerase sigma-70 factor2e-0652
NC_009925:1184442:118898911889891189603615Acaryochloris marina MBIC11017, complete genomeRNA polymerase sigma-24 subunit2e-0652
NC_015160:3749636:375426437542643754857594Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0652
NC_003888:4251867:428257742825774283287711Streptomyces coelicolor A3(2), complete genomeRNA polymerase sigma-70 factor2e-0651.6
NC_017243:424132:440723440723441268546Brachyspira intermedia PWS/A chromosome, complete genomeR polymerase sigma-70 factor 22e-0651.6
NC_017243:685783:693812693812694471660Brachyspira intermedia PWS/A chromosome, complete genomeRpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma242e-0651.6
NC_009668:1726000:173066117306611731212552Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceECF subfamily RNA polymerase sigma-24 factor2e-0651.6
NC_012225:1657248:166270016627001663245546Brachyspira hyodysenteriae WA1, complete genomeR polymerase sigma-70 factor 22e-0651.6
NC_011894:2747491:276819727681972768877681Methylobacterium nodulans ORS 2060, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0651.2
NC_011830:1190502:120506412050641205564501Desulfitobacterium hafniense DCB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0651.2
NC_015064:2341152:236514523651452365786642Acidobacterium sp. MP5ACTX9 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0651.2
NC_014933:2195683:220691322069132207464552Bacteroides helcogenes P 36-108 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0651.2
NC_015496:2279829:228225522822552282800546Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0651.2
NC_016609:2951301:297559729755972976196600Niastella koreensis GR20-10 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0651.2
NC_020126:5152359:515339351533935153953561Myxococcus stipitatus DSM 14675, complete genomeECF family RNA polymerase sigma factor4e-0650.8
NC_007777:2964500:298966629896662990505840Frankia sp. CcI3, complete genomesigma-244e-0650.8
NC_002696:2941644:296405329640532964613561Caulobacter crescentus CB15, complete genomeRNA polymerase sigma-70 factor4e-0650.8
NC_011916:2967624:299003329900332990593561Caulobacter crescentus NA1000 chromosome, complete genomeRNA polymerase sigma factor4e-0650.8
NC_014933:2240000:224013422401342240682549Bacteroides helcogenes P 36-108 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0650.8
NC_021184:3174500:320020332002033200760558Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family6e-0650.4
NC_013730:2490000:249877424987742499262489Spirosoma linguale DSM 74, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0650.4
NC_010510:139685:160605160605161294690Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0650.4
NC_015410:1324313:133080213308021331320519Pseudomonas mendocina NK-01 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor5e-0650.4
NC_015172:850802:875550875550876032483Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0650.4
NC_014932:1232346:130281113028111303365555Bartonella clarridgeiae 73, complete genomeRNA polymerase sigma factor, ecr subfamily7e-0650.1
NC_006350:1938631:196639319663931966929537Burkholderia pseudomallei K96243 chromosome 1, complete sequenceRNA polymerase sigma-70 factor7e-0650.1
NC_015061:1481500:149778814977881498369582Rahnella sp. Y9602 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0650.1
NC_017047:1434500:145073114507311451312582Rahnella aquatilis HX2 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit7e-0650.1
NC_021150:201237:217624217624218127504Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family7e-0650.1
NC_012560:201237:217624217624218127504Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family7e-0650.1
NC_011566:3994239:399821439982143998792579Shewanella piezotolerans WP3, complete genomeRNA polymerse sigmaE factor7e-0650.1
NC_008536:3160540:318629731862973186758462Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0650.1
NC_016112:1735044:174948717494871749993507Methylomicrobium alcaliphilum chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit8e-0649.7
NC_017273:352150:380081380081380596516Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, completeECF subfamily RNA polymerase sigma-24 subunit9e-0649.7