Pre_GI: BLASTP Hits

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Query: NC_004578:3817330:3831038 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3831038, End: 3831583, Length: 546

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:2177184:218310721831072183652546Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH02, putative chitinase6e-93339
NC_005773:2177184:219379921937992194344546Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH02, putative chitinase9e-81298
NC_004129:2234851:224007122400712240622552Pseudomonas fluorescens Pf-5, complete genomepyocin R2_PP, lytic enzyme1e-75281
NC_015733:1976752:198241519824151982966552Pseudomonas putida S16 chromosome, complete genomepyocin R2_PP, lytic enzyme2e-70264
NC_017986:4124335:412990241299024130471570Pseudomonas putida ND6 chromosome, complete genomeglycoside hydrolase family protein5e-66249
NC_004578:4432983:444604244460424446575534Pseudomonas syringae pv. tomato str. DC3000, complete genomelysozyme, putative3e-62237
NC_012660:4558122:457641545764154576948534Pseudomonas fluorescens SBW25 chromosome, complete genomeputative phage encoded lysozyme9e-59226
NC_016830:4999946:501578150157815016344564Pseudomonas fluorescens F113 chromosome, complete genomepyocin lytic enzyme1e-56218
NC_016002:2037374:205644220564422056984543Pseudogulbenkiania sp. NH8B, complete genomeglycoside hydrolase family protein4e-47187
NC_010002:3785313:378740737874073787958552Delftia acidovorans SPH-1, complete genomeputative lysozyme3e-34144
NC_009255:1369200:138805713880571388635579Burkholderia vietnamiensis G4 chromosome 2, complete sequenceglycoside hydrolase family protein1e-31135
NC_011770:1431740:145211114521111452728618Pseudomonas aeruginosa LESB58, complete genomeCOG3179: Predicted chitinase3e-30130
NC_013592:4295449:431316143131614313787627Dickeya dadantii Ech586, complete genomeglycoside hydrolase family 193e-30130
NC_012912:325913:332536332536333162627Dickeya zeae Ech1591, complete genomeglycoside hydrolase family 196e-29126
NC_017047:1906000:191830019183001918926627Rahnella aquatilis HX2 chromosome, complete genomeputative endolysin3e-28124
NC_013282:1200993:122515912251591225785627Cronobacter turicensis, complete genomeUncharacterized protein HI14153e-26117
NC_014973:5099543:5124478512447851254881011Geobacter sp. M18 chromosome, complete genomeglycoside hydrolase family 192e-24111
NC_011770:860944:881683881683882300618Pseudomonas aeruginosa LESB58, complete genomePredicted chitinase; lytic protein2e-23108
NC_011094:638552:664550664550665164615Salmonella enterica subsp. enterica serovar Schwarzengrund strlytic enzyme7e-22103
NC_014168:1724993:1731346173134617328481503Segniliparus rotundus DSM 44985 chromosome, complete genomefamily 19 glycoside hydrolase9e-22103
NC_015761:1017301:102522610252261025840615Salmonella bongori NCTC 12419, complete genomebacteriophage protein2e-21101
NC_016047:345491:355177355177355635459Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeendopeptidase LytF3e-21100
NC_012731:2083650:211163421116342112260627Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative glycoside hydrolase1e-2099.4
NC_014150:1607873:162002416200241620638615Brachyspira murdochii DSM 12563 chromosome, complete genomeglycoside hydrolase family 192e-2098.2
NC_010161:1324381:133379013337901334371582Bartonella tribocorum CIP 105476, complete genomepeptidoglycan binding protein3e-2098.2
NC_010161:1501758:151116715111671511748582Bartonella tribocorum CIP 105476, complete genomehypothetical protein3e-2098.2
NC_020181:5217000:522775752277575228383627Enterobacter aerogenes EA1509E, complete genomehypothetical protein3e-2098.2
NC_015663:4522109:452715045271504527779630Enterobacter aerogenes KCTC 2190 chromosome, complete genomelytic enzyme4e-2097.8
NC_013850:2182337:220954522095452210171627Klebsiella variicola At-22 chromosome, complete genomeglycoside hydrolase family 193e-2097.8
NC_009648:1541699:156536715653671565993627Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative glycoside hydrolase3e-2097.8
NC_017325:1897500:189797818979781898946969Sinorhizobium meliloti SM11 chromosome, complete genomechitinase-like protein5e-2097.4
NC_010161:2548254:255766425576642558245582Bartonella tribocorum CIP 105476, complete genomehypothetical protein6e-2096.7
NC_010161:1949637:195948819594881960069582Bartonella tribocorum CIP 105476, complete genomehypothetical protein6e-2096.7
NC_012214:1974500:198840819884081989031624Erwinia pyrifoliae Ep1/96, complete genomeLytic enzyme1e-1995.5
NC_016641:1148220:1156074115607411570781005Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein2e-1995.1
NC_018748:1443176:1454863145486314560471185Emticicia oligotrophica DSM 17448 chromosome, complete genomehypothetical protein2e-1995.1
NC_016612:3314846:333598533359853336533549Klebsiella oxytoca KCTC 1686 chromosome, complete genomelytic enzyme3e-1994.4
NC_017325:1488841:148964314896431490611969Sinorhizobium meliloti SM11 chromosome, complete genomechitinase-like protein5e-1994
NC_018607:2010500:201515420151542015747594Brachyspira pilosicoli B2904 chromosome, complete genomeglycoside hydrolase6e-1993.6
NC_010397:1802724:1809368180936818107411374Mycobacterium abscessus chromosome Chromosome, complete sequenceBacteriophage protein8e-1993.2
NC_003902:3514000:353599035359903536631642Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related lytic enzyme1e-1892.8
NC_020301:853267:865370865370865978609Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomehypothetical protein1e-1892.4
NC_014121:1682638:169633316963331696881549Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completelytic enzyme1e-1892.4
NC_020181:5384015:539721353972135397842630Enterobacter aerogenes EA1509E, complete genomePhage endolysin2e-1891.7
NC_014500:4691915:4699276469927647015822307Dickeya dadantii 3937 chromosome, complete genomeEF hand domain-containing protein3e-1891.3
NC_005085:24623:3211132111342522142Chromobacterium violaceum ATCC 12472, complete genomeprobable hydroxyethylthiazole kinase9e-1889.7
NC_013282:1804909:182501118250111825565555Cronobacter turicensis, complete genomehypothetical protein1e-1789.4
NC_010067:2304313:232964023296402329939300Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-1787.8
NC_019908:807000:812628812628813203576Brachyspira pilosicoli P43/6/78 chromosome, complete genomeglycoside hydrolase family protein3e-1787.8
NC_014150:1497381:150134615013461501939594Brachyspira murdochii DSM 12563 chromosome, complete genomeglycoside hydrolase family 195e-1787.4
NC_014150:1936154:193923519392351939828594Brachyspira murdochii DSM 12563 chromosome, complete genomeglycoside hydrolase family 195e-1787.4
NC_014150:2560475:256367625636762564269594Brachyspira murdochii DSM 12563 chromosome, complete genomeglycoside hydrolase family 195e-1787
NC_017025:1761918:176969117696911770404714Flavobacterium indicum GPTSA100-9, complete genomeGlycoside hydrolase family 19, putative chitinase9e-1786.3
NC_017243:58000:613536135361964612Brachyspira intermedia PWS/A chromosome, complete genomeglycoside hydrolase2e-1685.5
NC_011601:2806392:281283928128392813465627Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeendolysin2e-1685.1
NC_018604:305957:314155314155314781627Brachyspira pilosicoli WesB complete genomeglycoside hydrolase family 195e-1580.5
NC_020054:4983691:498793949879394988610672Fibrella aestuarina BUZ 2 drat genomeputative chitinase2e-1479
NC_009937:958576:961972961972962877906Azorhizobium caulinodans ORS 571, complete genomeputative chitinase2e-1478.6
NC_014210:1625954:163517616351761636063888Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Chitinase6e-1373.6
NC_005773:2177184:218469621846962184875180Pseudomonas syringae pv. phaseolicola 1448A, complete genome5e-1270.5
NC_011094:1923870:194398219439821944269288Salmonella enterica subsp. enterica serovar Schwarzengrund strlytic enzyme1e-1169.3
NC_011205:1391971:140140014014001401687288Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853lytic enzyme3e-1168.2
NC_013961:629307:6394816394816422432763Erwinia amylovora, complete genomehypothetical protein5e-1167.4
NC_013971:3117000:3129058312905831318202763Erwinia amylovora ATCC 49946 chromosome, complete genomechitinase5e-1167.4
NC_014623:4788768:479649847964984797475978Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeglycoside hydrolase8e-1166.6
NC_018604:2871328:288056228805622881140579Brachyspira pilosicoli WesB complete genomeendolysin glycoside hydrolase1e-1066.2
NC_017243:1734179:174576917457691746251483Brachyspira intermedia PWS/A chromosome, complete genomeendolysin glycoside hydrolase1e-1066.2
NC_019908:1886647:189339118933911893969579Brachyspira pilosicoli P43/6/78 chromosome, complete genomeendolysin glycoside hydrolase2e-1065.5
NC_014330:1324500:133383613338361334414579Brachyspira pilosicoli 95/1000 chromosome, complete genomeendolysin glycoside hydrolase2e-1065.1
NC_018607:2747462:275671727567172757295579Brachyspira pilosicoli B2904 chromosome, complete genomeendolysin glycoside hydrolase3e-1064.7
NC_011071:2733438:2736843273684327378501008Stenotrophomonas maltophilia R551-3, complete genomechitinase-like protein1e-0962.4
NC_015947:2752450:2755845275584527568521008Burkholderia sp. JV3 chromosome, complete genomeglycoside hydrolase family protein5e-0960.8
NC_003047:3419212:3435808343580834377271920Sinorhizobium meliloti 1021, complete genomePUTATIVE PROTEASE TRANSMEMBRANE PROTEIN9e-0959.7
NC_009439:101174:1085661085661117303165Pseudomonas mendocina ymp, complete genomeglycoside hydrolase family protein9e-0959.7
NC_010943:3034366:3037592303759230385961005Stenotrophomonas maltophilia K279a, complete genomeputative bacteriophage protein1e-0859.3
NC_010552:592154:6011786011786038052628Burkholderia ambifaria MC40-6 chromosome 2, complete sequencechitinase-like protein2e-0858.9
NC_018748:1443176:1446411144641114540427632Emticicia oligotrophica DSM 17448 chromosome, complete genomeFibronectin type III domain protein7e-0857
NC_014118:1171411:1179632117963211821632532Burkholderia sp. CCGE1002 chromosome chromosome 2, completechitinase-like protein7e-0857
NC_010717:3868000:3873652387365238765462895Xanthomonas oryzae pv. oryzae PXO99A, complete genomeEF hand domain protein6e-0857
NC_014330:1593000:159658415965841597099516Brachyspira pilosicoli 95/1000 chromosome, complete genomeputative Lys-endolysin; glycoside hydrolase6e-0857
NC_017243:1734179:175218517521851752775591Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein1e-0755.8
NC_010067:2529750:2539587253958725418032217Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-0754.7
NC_010102:1137247:115165111516511151881231Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0652.4
NC_016810:1903426:192366219236621923892231Salmonella enterica subsp. enterica serovar Typhimurium str2e-0652.4
NC_016860:1943203:196163519616351961865231Salmonella enterica subsp. enterica serovar Typhimurium strlytic enzyme2e-0652.4
NC_016863:1905454:192569019256901925977288Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein2e-0651.6
NC_016857:1903426:192366219236621923949288Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74lytic enzyme2e-0651.6
NC_016856:1957263:197749919774991977786288Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein2e-0651.6
NC_003197:1945858:196609419660941966381288Salmonella typhimurium LT2, complete genomehypothetical protein2e-0651.6