Pre_GI: BLASTP Hits

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Query: NC_004578:212468:215807 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 215807, End: 217363, Length: 1557

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:20738:4275442754443101557Pseudomonas syringae pv. tomato str. DC3000, complete genomerecombinase, putative01052
NC_005773:106000:1111381111381127091572Pseudomonas syringae pv. phaseolicola 1448A, complete genomerecombinase0978
NC_020209:4768500:4797153479715347985741422Pseudomonas poae RE*1-1-14, complete genomerecombinase0859
NC_008825:3161146:3169372316937231709371566Methylibium petroleiphilum PM1, complete genomeputative recombinase1e-173609
NC_010725:3315007:3340397334039733418901494Methylobacterium populi BJ001, complete genomeRecombinase2e-169595
NC_008825:1258500:1289040128904012906051566Methylibium petroleiphilum PM1, complete genomeputative recombinase4e-169595
NC_008826:170609:1715051715051730701566Methylibium petroleiphilum PM1 plasmid RPME01, complete sequenceputative recombinase4e-169595
NC_007794:561623:5686745686745702481575Novosphingobium aromaticivorans DSM 12444, complete genomeRecombinase3e-168592
NC_007494:1:97379737113081572Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencerecombinase3e-165582
NC_009050:567209:5855105855105870811572Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceRecombinase1e-164580
NC_007651:72952:8089780897824621566Burkholderia thailandensis E264 chromosome I, complete sequencerecombinase1e-163577
NC_011992:3375929:3389131338913133906961566Acidovorax ebreus TPSY, complete genomeRecombinase4e-163575
NC_019973:6102442:6116952611695261185261575Mesorhizobium australicum WSM2073, complete genomesite-specific recombinase, DNA invertase Pin1e-160566
NC_008358:2638245:2673229267322926748061578Hyphomonas neptunium ATCC 15444, complete genomesite-specific recombinase, resolvase family2e-159562
NC_015381:1:7939793995101572Burkholderia gladioli BSR3 chromosome 1, complete sequencerecombinase2e-158559
NC_003306:22228:4227842278437951518Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencerecombinase7e-158557
NC_003064:22535:4258542585441411557Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein7e-158557
NC_004463:925140:9483239483239498911569Bradyrhizobium japonicum USDA 110, complete genomerecombinase1e-155550
NC_007651:3064530:3156665315666531582511587Burkholderia thailandensis E264 chromosome I, complete sequencerecombinase2e-151536
NC_012660:5793200:5821828582182858233931566Pseudomonas fluorescens SBW25 chromosome, complete genomeputative recombinase4e-148525
NC_009801:2898426:2907967290796729095231557Escherichia coli E24377A, complete genomesite-specific recombinase, resolvase family4e-128458
NC_009708:915814:9260369260369275951560Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeresolvase family site-specific recombinase1e-127456
NC_012967:2669182:2678929267892926804851557Escherichia coli B str. REL606 chromosome, complete genomeRecombinase1e-127456
NC_012947:1106000:1114312111431211158681557Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRecombinase1e-127456
NC_009436:3117661:3127108312710831286641557Enterobacter sp. 638, complete genomerecombinase6e-127454
NC_016514:3573400:3582095358209535836721578Enterobacter cloacae EcWSU1 chromosome, complete genomeresolvase family site-specific recombinase8e-125447
NC_011283:4438500:4472973447297344745081536Klebsiella pneumoniae 342 chromosome, complete genomesite-specific recombinase, resolvase family8e-118424
NC_010814:1441327:1443079144307914446831605Geobacter lovleyi SZ, complete genomeRecombinase8e-118424
NC_015675:3046852:3047676304767630492381563Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRecombinase1e-114414
NC_020453:1072979:1080316108031610819381623Agromonas oligotrophica S58 DNA, complete genomerecombinase4e-100365
NC_008686:405159:433296433296434282987Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase2e-97357
NC_017249:18493:2978729787313671581Bradyrhizobium japonicum USDA 6, complete genomerecombinase2e-96353
NC_004463:18497:2979229792313721581Bradyrhizobium japonicum USDA 110, complete genomerecombinase2e-96353
NC_009445:467682:4925524925524941831632Bradyrhizobium sp. ORS 278 chromosome, complete genomerecombinase6e-95348
NC_007404:359764:3656513656513666701020Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein4e-90332
NC_014562:2563466:257245425724542573434981Pantoea vagans C9-1 chromosome, complete genomerecombinase2e-59230
NC_010338:650054:670289670289670762474Caulobacter sp. K31, complete genomeResolvase domain8e-26119
NC_007644:280000:2846452846452860961452Moorella thermoacetica ATCC 39073, complete genome7e-22105
NC_013890:103807:1038071038071052641458Dehalococcoides sp. GT chromosome, complete genome4e-21103
NC_016627:793583:7976187976187991341517Clostridium clariflavum DSM 19732 chromosome, complete genome3e-20100
NC_002936:1395432:1398114139811413997781665Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein5e-2099.8
NC_014538:2158131:2183214218321421847341521Thermoanaerobacter sp. X513 chromosome, complete genomeRecombinase1e-1998.2
NC_009455:273519:3106353106353122811647Dehalococcoides sp. BAV1 chromosome, complete genomeresolvase domain-containing protein4e-1996.7
NC_013890:103807:1052911052911069101620Dehalococcoides sp. GT chromosome, complete genomeResolvase domain protein4e-1996.7
NC_013552:207345:2073452073452090361692Dehalococcoides sp. VS, complete genomeresolvase domain protein, PinR type3e-1790.5
NC_002936:149100:1491001491001506321533Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein1e-1584.7
NC_011365:1171536:1204634120463412063221689Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeResolvase domain3e-1583.6
NC_007432:654904:7003617003617017071347Streptococcus agalactiae A909, complete genomeprophage LambdaSa04, site-specific recombinase, resolvase family9e-1582
NC_010320:1268355:1311640131164013132111572Thermoanaerobacter sp. X514 chromosome, complete genomeresolvase domain-containing protein5e-1479.7
NC_014538:1598106:1601171160117116027421572Thermoanaerobacter sp. X513 chromosome, complete genomeResolvase domain-containing protein5e-1479.7
NC_015675:2247960:2274308227430822759331626Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRecombinase7e-1479.3
NC_015977:2874000:2893300289330028949851686Roseburia hominis A2-183 chromosome, complete genomesite-specific recombinase1e-1378.6
NC_010125:955863:9679829679829696491668Gluconacetobacter diazotrophicus PAl 5, complete genomePutative DNA recombinase1e-1378.6
NC_004461:1:4244142441440691629Staphylococcus epidermidis ATCC 12228, complete genomecassette chromosome recombinase B2e-1377.8
NC_006322:4149500:4174019417401941752631245Bacillus licheniformis ATCC 14580, complete genomeSpoIVCA2e-1377.8
NC_006270:4149004:4173904417390441751481245Bacillus licheniformis ATCC 14580, complete genomesite-specific DNA recombinase2e-1377.8
NC_014246:1402500:1412236141223614137981563Mobiluncus curtisii ATCC 43063 chromosome, complete genomesite-specific recombinase4e-1376.6
NC_016027:2446806:2457542245754224592301689Gluconacetobacter xylinus NBRC 3288, complete genomeDNA resolvase5e-1376.3
NC_014394:1815638:1825770182577018274041635Gallionella capsiferriformans ES-2 chromosome, complete genomeResolvase domain7e-1375.9
NC_009454:136468:1560681560681575431476Pelotomaculum thermopropionicum SI, complete genomehypothetical protein8e-1375.5
NC_010125:2998619:3006108300610830077691662Gluconacetobacter diazotrophicus PAl 5, complete genomeputative DNA recombinase1e-1275.1
NC_014915:2963500:3002419300241930038071389Geobacillus sp. Y412MC52 chromosome, complete genomeResolvase domain protein2e-1274.3
NC_013411:597235:6001286001286015161389Geobacillus sp. Y412MC61, complete genomeResolvase domain protein2e-1274.3
NC_013209:2582878:259456625945662595432867Acetobacter pasteurianus IFO 3283-01, complete genomeDNA resolvase3e-1273.9
NC_008686:95326:9609496094977431650Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase3e-1273.9
NC_015976:2187377:2193567219356721952611695Sphingobium sp. SYK-6, complete genomeputative recombinase3e-1273.6
NC_010125:74904:8646786467880771611Gluconacetobacter diazotrophicus PAl 5, complete genome6e-1272.8
NC_015977:2309873:2331366233136623330421677Roseburia hominis A2-183 chromosome, complete genomesite-specific recombinase7e-1272.4
NC_011365:1171536:1189109118910911908451737Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeResolvase domain7e-1272.4
NC_010125:955863:9861399861399878451707Gluconacetobacter diazotrophicus PAl 5, complete genomeputative resolvase7e-1272.4
NC_009952:366959:3861373861373878131677Dinoroseobacter shibae DFL 12, complete genomerecombinase8e-1272.4
NC_018870:2316499:2364714236471423662821569Thermacetogenium phaeum DSM 12270 chromosome, complete genomeresolvase8e-1272.4
NC_004463:7683426:7700024770002477015051482Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein8e-1272.4
NC_015660:739040:7405367405367419271392Geobacillus thermoglucosidasius C56-YS93 chromosome, completeResolvase domain-containing protein9e-1272
NC_009445:6621996:6670258667025866718681611Bradyrhizobium sp. ORS 278 chromosome, complete genomerecombinase1e-1172
NC_010337:2793667:2815262281526228168361575Heliobacterium modesticaldum Ice1, complete genomeDNA recombinase, putative1e-1171.6
NC_010172:2722000:273599827359982736843846Methylobacterium extorquens PA1, complete genomeResolvase domain2e-1171.2
NC_010581:2999002:3031691303169130333341644Beijerinckia indica subsp. indica ATCC 9039, complete genome2e-1171.2
NC_012491:3736167:3770304377030437719441641Brevibacillus brevis NBRC 100599, complete genomeputative integrase3e-1170.5
NC_016627:4323370:4327812432781243293801569Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin4e-1170.1
NC_014410:800500:8355538355538371211569Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,Resolvase domain4e-1169.7
NC_010003:449192:4643804643804659481569Petrotoga mobilis SJ95, complete genomeResolvase domain6e-1169.3
NC_016627:4270949:4288360428836042899281569Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin6e-1169.3
NC_021064:2001786:2010750201075020123061557Propionibacterium avidum 44067, complete genomeresolvase1e-1068.6
NC_004668:2198027:2204960220496022065731614Enterococcus faecalis V583, complete genomesite-specific recombinase, resolvase family, putative1e-1068.6
NC_010125:2884762:2898971289897129007551785Gluconacetobacter diazotrophicus PAl 5, complete genomeputative DNA recombinase1e-1068.2
NC_008686:95326:9763697636994291794Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase1e-1068.2
NC_018870:2316499:2329010232901023305781569Thermacetogenium phaeum DSM 12270 chromosome, complete genomeresolvase3e-1067
NC_014376:3547218:3566356356635635680141659Clostridium saccharolyticum WM1 chromosome, complete genomeRecombinase5e-1066.2
CP002207:3520874:3536937353693735386251689Bacillus atrophaeus 1942, complete genomeresolvase domain protein7e-1065.9
NC_014639:3520874:3536937353693735386251689Bacillus atrophaeus 1942 chromosome, complete genomeresolvase domain-containing protein7e-1065.9
NC_009442:908507:9248809248809264421563Streptococcus suis 05ZYH33 chromosome, complete genomeDNA recombinase6e-1065.9
NC_011898:3367457:3370767337076733723381572Clostridium cellulolyticum H10, complete genomeResolvase domain protein9e-1065.5
NC_015186:2197236:2265156226515622667961641Acidiphilium multivorum AIU301, complete genomeputative recombinase1e-0965.1
NC_015186:2197236:2286288228628822879221635Acidiphilium multivorum AIU301, complete genomeputative recombinase1e-0965.1
NC_009012:1:10410417231620Clostridium thermocellum ATCC 27405, complete genomeRecombinase2e-0964.7
NC_009012:3823879:10410417231620Clostridium thermocellum ATCC 27405, complete genomeRecombinase2e-0964.7
NC_011958:735755:7525167525167541351620Rhodobacter sphaeroides KD131 chromosome 2, complete genomehypothetical protein2e-0964.3
NC_010125:1051735:107408210740821074840759Gluconacetobacter diazotrophicus PAl 5, complete genome2e-0964.3
NC_009455:53000:989409894099575636Dehalococcoides sp. BAV1 chromosome, complete genomeresolvase domain-containing protein2e-0963.9
NC_016627:2524307:2540263254026325418131551Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin3e-0963.9
NC_009633:4097536:4102193410219341037581566Alkaliphilus metalliredigens QYMF chromosome, complete genomeresolvase domain-containing protein4e-0963.5
NC_014393:4775452:4783933478393347854381506Clostridium cellulovorans 743B chromosome, complete genomeResolvase domain4e-0963.2
NC_008530:1454118:1482038148203814835581521Lactobacillus gasseri ATCC 33323, complete genomeSite-specific recombinase, DNA invertase Pin related protein4e-0963.2
NC_009706:2673906:2695449269544926970201572Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein7e-0962.8
NC_011837:2605409:2626952262695226285231572Clostridium kluyveri NBRC 12016, complete genomehypothetical protein7e-0962.8
NC_008530:1454118:1480338148033814819991662Lactobacillus gasseri ATCC 33323, complete genomeSite-specific recombinase, DNA invertase Pin related protein6e-0962.8
NC_009953:691686:6921826921826941521971Salinispora arenicola CNS-205 chromosome, complete genomerecombinase5e-0962.8
NC_016791:4038069:4038069403806940396341566Clostridium sp. BNL1100 chromosome, complete genomesite-specific recombinase, DNA invertase Pin1e-0862
NC_014828:1019533:1033581103358110350531473Ethanoligenens harbinense YUAN-3 chromosome, complete genomeResolvase domain1e-0862
NC_009720:900884:9144479144479164351989Xanthobacter autotrophicus Py2, complete genomerecombinase1e-0861.6
NC_014623:2962330:2965469296546929666711203Stigmatella aurantiaca DW4/3-1 chromosome, complete genomerecombinase1e-0861.6
NC_006582:2944237:2992454299245429938571404Bacillus clausii KSM-K16, complete genomesite-specific recombinase for integration and excision1e-0861.6
NC_016077:1876119:1899458189945819010351578Acidaminococcus intestini RyC-MR95 chromosome, complete genomeSite-specific recombinase2e-0861.2
NC_016048:2873669:2897714289771428993811668Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase2e-0861.2
NC_015977:2445835:2452242245224224538281587Roseburia hominis A2-183 chromosome, complete genomehypothetical protein2e-0861.2
NC_015278:176508:1893931893931910631671Aerococcus urinae ACS-120-V-Col10a chromosome, complete genomeresolvase, N-terminal domain protein2e-0861.2
NC_011666:2109274:2112431211243121141161686Methylocella silvestris BL2, complete genomeResolvase domain protein2e-0860.8
NC_014614:2643203:2648799264879926504481650Clostridium sticklandii, complete genomesite-specific DNA recombinase (modular protein)3e-0860.5
NC_009668:445134:4623194623194639741656Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequencerecombinase3e-0860.5
NC_008687:302450:3066933066933083511659Paracoccus denitrificans PD1222 chromosome 2, complete sequenceRecombinase4e-0860.1
NC_020291:491000:4969934969934985491557Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomesite-specific recombinase, DNA invertase Pin4e-0860.1
NC_014393:4775452:4782362478236247839481587Clostridium cellulovorans 743B chromosome, complete genomeResolvase domain4e-0860.1
NC_009089:581655:6044276044276060281602Clostridium difficile 630, complete genomeconjugative transposon site-specific recombinase6e-0859.7
NC_007296:1073784:1081126108112610828051680Streptococcus pyogenes MGAS6180, complete genomesite-specific recombinase6e-0859.7
NC_014638:363577:3836373836373853131677Bifidobacterium bifidum PRL2010 chromosome, complete genomerecombinase family protein5e-0859.7
NC_013720:361785:3896153896153911051491Pirellula staleyi DSM 6068, complete genomeResolvase domain protein7e-0859.3
NC_008686:1960034:1972763197276319744991737Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase7e-0859.3
NC_012471:1197534:120630712063071207161855Streptococcus equi subsp. equi 4047, complete genomeconjugative transposon site-specific recombinase8e-0858.9
NC_012470:1390285:1409368140936814110501683Streptococcus equi subsp. zooepidemicus, complete genomesite-specific recombinase1e-0758.9
NC_014828:1987487:1992758199275819945511794Ethanoligenens harbinense YUAN-3 chromosome, complete genomeResolvase domain1e-0758.5
NC_009720:251703:2779762779762796311656Xanthobacter autotrophicus Py2, complete genomeresolvase domain-containing protein1e-0758.2
NC_010337:2793667:2817618281761828191951578Heliobacterium modesticaldum Ice1, complete genomeDNA recombinase, putative2e-0757.8
NC_016048:2678205:2695235269523526969171683Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase2e-0757.8
NC_009972:606393:6089936089936103811389Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome3e-0757
NC_016048:522637:5403145403145418341521Oscillibacter valericigenes Sjm18-20, complete genomeputative recombinase8e-0755.8
NC_014393:1022843:1035656103565610372451590Clostridium cellulovorans 743B chromosome, complete genomeResolvase domain1e-0655.5
NC_013316:2033906:2066666206666620683181653Clostridium difficile R20291, complete genomehypothetical protein1e-0655.1
NC_017068:2661419:2688876268887626902761401Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative phage integrase2e-0654.7
NC_017161:502206:5022065022065036181413Hydrogenobacter thermophilus TK-6 chromosome, complete genome2e-0654.7
NC_009720:583060:5876205876205892451626Xanthobacter autotrophicus Py2, complete genome2e-0654.7
NC_009706:2673906:2697438269743826990271590Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein2e-0654.3
NC_011837:2605409:2628941262894126305301590Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-0654.3
NC_013799:502126:5021265021265036281503Hydrogenobacter thermophilus TK-6, complete genomeresolvase domain protein2e-0654.3
NC_015977:3424178:3429807342980734313871581Roseburia hominis A2-183 chromosome, complete genomeRecombinase5e-0653.1
NC_010320:1268355:1309657130965713112161560Thermoanaerobacter sp. X514 chromosome, complete genomeresolvase domain-containing protein5e-0653.1
NC_011898:3367457:3372756337275633743211566Clostridium cellulolyticum H10, complete genomeResolvase domain protein5e-0653.1
NC_014538:1598106:1603166160316616047251560Thermoanaerobacter sp. X513 chromosome, complete genomeResolvase domain-containing protein5e-0653.1
NC_013316:2033906:2085969208596920876391671Clostridium difficile R20291, complete genomehypothetical protein8e-0652.4
NC_012781:700226:7191277191277207971671Eubacterium rectale ATCC 33656, complete genomecassette chromosome recombinase B8e-0652.4
NC_012781:2552723:2577962257796225796321671Eubacterium rectale ATCC 33656, complete genomecassette chromosome recombinase B8e-0652.4