Pre_GI: BLASTP Hits

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Query: NC_004463:8401060:8441419 Bradyrhizobium japonicum USDA 110, complete genome

Start: 8441419, End: 8442180, Length: 762

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004463:2262467:228840322884032289197795Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulator FixK6e-58224
NC_007964:2152000:216817021681702168865696Nitrobacter hamburgensis X14, complete genometranscriptional regulator, Crp/Fnr family3e-56218
NC_011894:5468500:546963554696355470327693Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family3e-41168
NC_010511:6711836:671476367147636715446684Methylobacterium sp. 4-46 chromosome, complete genomeCrp/FNR family transcriptional regulator1e-38159
NC_011894:3988500:400338440033844004100717Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family9e-26117
NC_011894:5056901:510326151032615103977717Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family9e-26117
NC_007643:3799425:383194738319473832735789Rhodospirillum rubrum ATCC 11170, complete genomeTranscriptional Regulator, Crp/Fnr family2e-23108
NC_013209:2759160:277893527789352779747813Acetobacter pasteurianus IFO 3283-01, complete genometranscriptional regulator cAMP-binding AadR/Crp/Fnr7e-22104
NC_010688:2400471:242659224265922427353762Xanthomonas campestris pv. campestris, complete genomeTranscriptional regulator, Crp/Fnr family8e-2097.4
NC_011894:6259649:627470162747016275444744Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family5e-1995.1
NC_006677:1052031:107268610726861073408723Gluconobacter oxydans 621H, complete genomeTranscriptional regulator AadR (cyclic AMP receptor protein)6e-1994.7
NC_009467:117812:123843123843124535693Acidiphilium cryptum JF-5 plasmid pACRY01, complete sequenceCRP/FNR family transcriptional regulator7e-1994.4
NC_012988:1280610:130177013017701302492723Methylobacterium extorquens DM4, complete genomeCrp/Fnr family transcriptional regulator6e-1891.3
NC_009075:15017:440874408744842756Burkholderia pseudomallei 668 chromosome II, complete sequencecAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases1e-1687.4
NC_007951:570500:602624602624603352729Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, Crp/Fnr family1e-1687
NC_009485:8138314:815373881537388154445708Bradyrhizobium sp. BTAi1 chromosome, complete genomenitrogen fixation regulation protein fixK2e-1685.9
NC_008702:1432952:146890714689071469707801Azoarcus sp. BH72, complete genomeprobable fumarate and nitrate reduction regulatory protein4e-1685.1
NC_009379:435404:451156451156451926771Polynucleobacter sp. QLW-P1DMWA-1, complete genomeputative transcriptional regulator, Crp/Fnr family6e-1684.7
NC_008258:1873805:187380518738051874557753Shigella flexneri 5 str. 8401, complete genomeFumarate and nitrate reduction Regulatory protein7e-1684.3
NC_003198:1336894:135538713553871356181795Salmonella enterica subsp. enterica serovar Typhi str. CT18,fumarate and nitrate reduction regulatory protein1e-1584
NC_004631:1623511:162500116250011625795795Salmonella enterica subsp. enterica serovar Typhi Ty2, completefumarate and nitrate reduction regulatory protein1e-1584
NC_015761:1630000:164667116466711647465795Salmonella bongori NCTC 12419, complete genomefumarate and nitrate reduction regulatory protein1e-1583.6
NC_006905:1766000:176744717674471768292846Salmonella enterica subsp. enterica serovar Choleraesuis strtranscriptional regulation of aerobic, anaerobic respiration, osmotic balance (CRP family)1e-1583.6
NC_007347:1215358:123856512385651239350786Ralstonia eutropha JMP134 chromosome 1, complete sequenceCyclic nucleotide-binding:Bacterial regulatory protein, Crp1e-1583.6
NC_009052:2512373:255438425543842555136753Shewanella baltica OS155, complete genomeputative transcriptional regulator, Crp/Fnr family2e-1583.2
NC_009792:1345500:136427313642731365103831Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-1583.2
NC_011149:1429523:144800414480041448756753Salmonella enterica subsp. enterica serovar Agona str. SL483,fumarate and nitrate reduction regulatory protein1e-1583.2
NC_006511:1273162:129164612916461292440795Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCfumarate and nitrate reduction regulatory protein1e-1583.2
NC_011080:1750000:175072917507291751481753Salmonella enterica subsp. enterica serovar Newport str. SL254,fumarate and nitrate reduction regulatory protein1e-1583.2
NC_003197:1753663:175437417543741755126753Salmonella typhimurium LT2, complete genometranscriptional regulator1e-1583.2
NC_011094:1726000:172755417275541728306753Salmonella enterica subsp. enterica serovar Schwarzengrund strfumarate/nitrate reduction transcriptional regulator1e-1583.2
NC_011147:1267005:128548912854891286283795Salmonella enterica subsp. enterica serovar Paratyphi A strfumarate/nitrate reduction transcriptional regulator1e-1583.2
NC_017046:1709578:171111017111101711862753Salmonella enterica subsp. enterica serovar Typhimurium str. 798fumarate and nitrate reduction regulatory protein1e-1583.2
NC_016863:1711832:171250117125011713295795Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1fumarate/nitrate reduction transcriptional regulator1e-1583.2
NC_016860:1752000:175206517520651752817753Salmonella enterica subsp. enterica serovar Typhimurium strfumarate/nitrate reduction transcriptional regulator1e-1583.2
NC_016857:1709695:171122717112271711979753Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Fumarate and nitrate reduction regulatory protein1e-1583.2
NC_016856:1763640:176435117643511765103753Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sfumarate/nitrate reduction transcriptional regulator1e-1583.2
NC_016810:1709695:171122717112271711979753Salmonella enterica subsp. enterica serovar Typhimurium strfumarate and nitrate reduction regulatory protein1e-1583.2
NC_009092:2282437:230490623049062305655750Shewanella loihica PV-4, complete genometranscriptional regulator, Crp/Fnr family5e-1581.6
NC_010676:304405:322022322022322678657Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, Crp/Fnr family2e-1479.7
NC_003295:199354:211194211194211994801Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSCRIPTION REGULATOR PROTEIN3e-1479
NC_012214:1974500:201414020141402014895756Erwinia pyrifoliae Ep1/96, complete genomeFumarate and nitrate reduction regulatory protein4e-1478.6
NC_007930:50801:665926659267296705Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118,Transcriptional regulator, crp family4e-1478.6
NC_014532:722151:734320734320735051732Halomonas elongata DSM 2581, complete genometranscriptional regulator Anr7e-1477.8
NC_008027:1847040:187215418721541872888735Pseudomonas entomophila L48, complete genometranscriptional regulator Anr1e-1376.6
NC_015422:1163752:117589611758961176639744Alicycliphilus denitrificans K601 chromosome, complete genomeCrp/Fnr family transcriptional regulator5e-1374.7
NC_014910:3458475:346770834677083468451744Alicycliphilus denitrificans BC chromosome, complete genomecyclic nucleotide-binding protein5e-1374.7
NC_017515:372487:392257392257392991735Neisseria meningitidis M04-240196 chromosome, complete genomeCarD family transcriptional regulator5e-1374.7
NC_014541:2122788:214288821428882143640753Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, Crp/Fnr family6e-1374.7
NC_011992:1038985:104761010476101048338729Acidovorax ebreus TPSY, complete genometranscriptional regulator, Crp/Fnr family1e-1273.9
NC_003112:364869:383368383368384102735Neisseria meningitidis MC58, complete genometranscriptional regulator, Crp/Fnr family1e-1273.9
NC_017516:364404:384318384318385052735Neisseria meningitidis H44/76 chromosome, complete genomeCarD family transcriptional regulator1e-1273.9
NC_008782:1136732:114535311453531146096744Acidovorax sp. JS42, complete genomeputative transcriptional regulator, Crp/Fnr family9e-1373.9
NC_014118:1528851:153062115306211531277657Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, Crp/Fnr family1e-1273.6
NC_009485:8138314:815645981564598157229771Bradyrhizobium sp. BTAi1 chromosome, complete genomenitrogen fixation regulation protein fixK1e-1273.6
NC_012560:1965251:197783819778381978572735Azotobacter vinelandii DJ, complete genomeFnr-like negative transcriptional regulator of CydAB2e-1273.2
NC_021150:1965264:197785119778511978585735Azotobacter vinelandii CA6, complete genomeFnr-like negative transcriptional regulator of CydAB2e-1273.2
NC_007952:444616:451579451579452328750Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, Crp/Fnr family4e-1272
NC_007298:1129889:114843611484361149179744Dechloromonas aromatica RCB, complete genomeCyclic nucleotide-binding:Bacterial regulatory protein, Crp4e-1272
NC_012913:772641:781906781906782679774Aggregatibacter aphrophilus NJ8700, complete genometranscriptional activator protein anr4e-1272
NC_016513:1568401:158001815800181580791774Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completefumarate/nitrate reduction transcriptional regulator5e-1271.6
NC_013416:1246880:125844412584441259217774Aggregatibacter actinomycetemcomitans D11S-1, complete genometranscriptional activator protein anr5e-1271.6
NC_015731:3658956:367863236786323679384753Nitrosomonas sp. Is79A3 chromosome, complete genomeCrp/Fnr family transcriptional regulator6e-1271.2
NC_016052:2335648:234916823491682349875708Tetragenococcus halophilus NBRC 12172, complete genomeFNR-like protein FLP1e-1170.5
NC_007973:1821753:183254218325421833276735Ralstonia metallidurans CH34 chromosome 1, complete sequencetranscriptional regulator, Crp/Fnr family4e-1168.6
NC_009254:745706:752178752178753053876Burkholderia vietnamiensis G4 chromosome 3, complete sequenceCRP/FNR family transcriptional regulator4e-1168.6
NC_015681:102000:116429116429117118690Thermodesulfatator indicus DSM 15286 chromosome, complete genomeCrp/Fnr family transcriptional regulator6e-1168.2
NC_010610:1649500:166446916644691665119651Lactobacillus fermentum IFO 3956, complete genometranscriptional regulator6e-1167.8
NC_010511:5467009:547824954782495478914666Methylobacterium sp. 4-46 chromosome, complete genomeCRP/FNR family transcriptional regulator1e-1067
NC_007494:714525:727571727571728302732Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencetranscriptional regulator, Crp-Fnr family1e-0963.5
NC_009049:627000:627031627031627771741Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequencecyclic nucleotide-binding protein6e-0961.2
NC_007493:546000:549413549413550153741Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceTranscriptional regulator, CRP/FNR family6e-0961.2
NC_011894:1499229:150931315093131510116804Methylobacterium nodulans ORS 2060, complete genomeputative transcriptional regulator, Crp/Fnr family9e-0960.8
NC_012440:1405879:141651514165151417198684Persephonella marina EX-H1, complete genometranscriptional regulator1e-0860.1
NC_008528:331260:344323344323344988666Oenococcus oeni PSU-1, complete genomeCrp-like transcriptional regulator2e-0859.7
NC_009485:8138314:815486681548668155327462Bradyrhizobium sp. BTAi1 chromosome, complete genomenitrogen fixation regulation protein fixK2e-0859.7
NC_010172:5447189:544936054493605450313954Methylobacterium extorquens PA1, complete genomecyclic nucleotide-binding8e-0857.8
NC_011757:5742290:574861057486105749509900Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, Crp/Fnr family8e-0857.4
NC_008711:3701635:370163537016353702312678Arthrobacter aurescens TC1, complete genomeputative cyclic nucleotide-binding domain2e-0756.2
NC_015850:1614965:162652416265241627255732Acidithiobacillus caldus SM-1 chromosome, complete genomeCrp/Fnr family transcriptional regulator3e-0755.5
NC_010172:798923:832740832740833504765Methylobacterium extorquens PA1, complete genomecyclic nucleotide-binding7e-0754.7
NC_012988:769981:806343806343807155813Methylobacterium extorquens DM4, complete genomeCrp/Fnr family transcriptional regulator9e-0754.3
NC_014934:2223822:222875722287572229515759Cellulophaga algicola DSM 14237 chromosome, complete genometranscriptional regulator, crp/fnr family1e-0653.9
NC_014209:2257316:228113822811382281815678Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,transcriptional regulator, Crp/Fnr family1e-0653.5
NC_013894:1288282:128828212882821289001720Thermocrinis albus DSM 14484 chromosome, complete genometranscriptional regulator, Crp/Fnr family2e-0653.1
NC_011757:3540992:3571656357165635728101155Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, Crp/Fnr family2e-0652.8
NC_015557:558127:567180567180567911732Hydrogenobaculum sp. 3684 chromosome, complete genometranscriptional regulator, Crp/Fnr family3e-0652.4
NC_015587:558180:567233567233567964732Hydrogenobaculum sp. SHO chromosome, complete genometranscriptional regulator, Crp/Fnr family3e-0652.4
NC_020411:558153:567206567206567937732Hydrogenobaculum sp. HO, complete genometranscriptional regulator, Crp/Fnr family3e-0652.4
NC_011757:3540992:357466535746653575411747Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, Crp/Fnr family3e-0652.4
NC_011757:39881:5967159671608251155Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, Crp/Fnr family3e-0652.4
NC_000911:3478000:348256834825683483284717Synechocystis sp. PCC 6803, complete genomeDNR protein4e-0652
NC_017039:3474500:347921234792123479928717Synechocystis sp. PCC 6803 substr. PCC-P, complete genometranscriptional regulator DNR4e-0652
NC_017052:3474500:347920134792013479917717Synechocystis sp. PCC 6803 substr. PCC-N, complete genometranscriptional regulator DNR4e-0652
NC_017277:3475500:348020134802013480917717Synechocystis sp. PCC 6803, complete genometranscriptional regulator DNR4e-0652
NC_010172:798923:8426678426678437971131Methylobacterium extorquens PA1, complete genomecyclic nucleotide-binding5e-0651.6
NC_008699:1673181:171828917182891718996708Nocardioides sp. JS614, complete genomecyclic nucleotide-binding6e-0651.2
NC_015436:474710:498940498940499809870Spirochaeta coccoides DSM 17374 chromosome, complete genometranscriptional regulator, Crp/Fnr family8e-0650.8
NC_009483:2640403:268419626841962684897702Geobacter uraniireducens Rf4 chromosome, complete genomeCRP/FNR family transcriptional regulator9e-0650.8