Pre_GI Gene

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Host: NC_007951 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007951:570500 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
570763571578816Ketopantoate hydroxymethyltransferaseQuickGO ontologyBLASTP
571617572297681Putative deoxynucleoside kinaseQuickGO ontologyBLASTP
57229457284254978-Dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPKQuickGO ontologyBLASTP
5728915744801590PolyA polymeraseQuickGO ontologyBLASTP
574477575163687HAD-superfamily subfamily IB hydrolase hypothetical 2QuickGO ontologyBLASTP
575156575926771hypothetical proteinBLASTP
5760005771511152hypothetical proteinBLASTP
5772355786531419hypothetical proteinBLASTP
578807579451645hypothetical protein
579499579873375hypothetical protein
579985580206222Transcriptional regulator XRE familyQuickGO ontologyBLASTP
580474580920447hypothetical protein
5809595838772919hypothetical proteinBLASTP
584206584613408hypothetical protein
585227586225999Putative replicaseQuickGO ontologyBLASTP
586495586743249hypothetical protein
586814587203390hypothetical protein
587322587639318hypothetical protein
587841588134294hypothetical protein
588653589348696hypothetical protein
5893515906101260hypothetical proteinBLASTP
591123591590468hypothetical protein
5918285928951068Phosphoribosylformylglycinamidine cyclo-ligaseQuickGO ontologyBLASTP
592983593930948tRNA isopentenyltransferaseQuickGO ontologyBLASTP
5939765960422067DNA mismatch repair proteinQuickGO ontologyBLASTP
596249596920672Putative DedA family transmembrane proteinQuickGO ontologyBLASTP
597074597886813Small Conductance Mechanosensitive Ion Channel MscS FamilyQuickGO ontologyBLASTP
598109598483375hypothetical protein
5987626005611800Putative voltage-gated chloride channel with CBS domainsQuickGO ontologyBLASTP
600610601023414Transcriptional regulator MarR familyQuickGO ontologyBLASTP
6011096022721164CBS domain containing membrane proteinQuickGO ontologyBLASTP
602624603352729Transcriptional regulator CrpFnr familyQuickGO ontologyBLASTP