Pre_GI: BLASTP Hits

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Query: NC_003306:22228:42278 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 42278, End: 43795, Length: 1518

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003064:22535:4258542585441411557Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein0998
NC_010725:3315007:3340397334039733418901494Methylobacterium populi BJ001, complete genomeRecombinase7e-170597
NC_007794:561623:5686745686745702481575Novosphingobium aromaticivorans DSM 12444, complete genomeRecombinase8e-170597
NC_019973:6102442:6116952611695261185261575Mesorhizobium australicum WSM2073, complete genomesite-specific recombinase, DNA invertase Pin4e-168591
NC_008825:3161146:3169372316937231709371566Methylibium petroleiphilum PM1, complete genomeputative recombinase5e-164577
NC_008358:2638245:2673229267322926748061578Hyphomonas neptunium ATCC 15444, complete genomesite-specific recombinase, resolvase family3e-163575
NC_007494:1:97379737113081572Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencerecombinase4e-163574
NC_008826:170609:1715051715051730701566Methylibium petroleiphilum PM1 plasmid RPME01, complete sequenceputative recombinase7e-163573
NC_008825:1258500:1289040128904012906051566Methylibium petroleiphilum PM1, complete genomeputative recombinase7e-163573
NC_009050:567209:5855105855105870811572Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceRecombinase8e-162570
NC_005773:106000:1111381111381127091572Pseudomonas syringae pv. phaseolicola 1448A, complete genomerecombinase2e-161569
NC_007651:3064530:3156665315666531582511587Burkholderia thailandensis E264 chromosome I, complete sequencerecombinase3e-161568
NC_004463:925140:9483239483239498911569Bradyrhizobium japonicum USDA 110, complete genomerecombinase5e-160564
NC_007651:72952:8089780897824621566Burkholderia thailandensis E264 chromosome I, complete sequencerecombinase8e-160563
NC_004578:20738:4275442754443101557Pseudomonas syringae pv. tomato str. DC3000, complete genomerecombinase, putative7e-159560
NC_004578:212468:2158072158072173631557Pseudomonas syringae pv. tomato str. DC3000, complete genomerecombinase, putative7e-159560
NC_011992:3375929:3389131338913133906961566Acidovorax ebreus TPSY, complete genomeRecombinase6e-158557
NC_012660:5793200:5821828582182858233931566Pseudomonas fluorescens SBW25 chromosome, complete genomeputative recombinase1e-153543
NC_015381:1:7939793995101572Burkholderia gladioli BSR3 chromosome 1, complete sequencerecombinase1e-149530
NC_020209:4768500:4797153479715347985741422Pseudomonas poae RE*1-1-14, complete genomerecombinase7e-149527
NC_009708:915814:9260369260369275951560Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeresolvase family site-specific recombinase7e-131468
NC_012967:2669182:2678929267892926804851557Escherichia coli B str. REL606 chromosome, complete genomeRecombinase6e-127454
NC_012947:1106000:1114312111431211158681557Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRecombinase6e-127454
NC_009801:2898426:2907967290796729095231557Escherichia coli E24377A, complete genomesite-specific recombinase, resolvase family4e-126451
NC_016514:3573400:3582095358209535836721578Enterobacter cloacae EcWSU1 chromosome, complete genomeresolvase family site-specific recombinase2e-125449
NC_009436:3117661:3127108312710831286641557Enterobacter sp. 638, complete genomerecombinase9e-119427
NC_015675:3046852:3047676304767630492381563Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRecombinase2e-116419
NC_010814:1441327:1443079144307914446831605Geobacter lovleyi SZ, complete genomeRecombinase5e-114411
NC_011283:4438500:4472973447297344745081536Klebsiella pneumoniae 342 chromosome, complete genomesite-specific recombinase, resolvase family4e-109395
NC_020453:1072979:1080316108031610819381623Agromonas oligotrophica S58 DNA, complete genomerecombinase1e-106387
NC_009445:467682:4925524925524941831632Bradyrhizobium sp. ORS 278 chromosome, complete genomerecombinase2e-101369
NC_008686:405159:433296433296434282987Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase2e-98360
NC_017249:18493:2978729787313671581Bradyrhizobium japonicum USDA 6, complete genomerecombinase3e-95349
NC_004463:18497:2979229792313721581Bradyrhizobium japonicum USDA 110, complete genomerecombinase3e-95349
NC_007404:359764:3656513656513666701020Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein1e-89330
NC_014562:2563466:257245425724542573434981Pantoea vagans C9-1 chromosome, complete genomerecombinase7e-60231
NC_010338:650054:670289670289670762474Caulobacter sp. K31, complete genomeResolvase domain1e-22108
NC_014538:2158131:2183214218321421847341521Thermoanaerobacter sp. X513 chromosome, complete genomeRecombinase5e-1996.3
NC_016627:793583:7976187976187991341517Clostridium clariflavum DSM 19732 chromosome, complete genome9e-1892
NC_010125:2998619:3006108300610830077691662Gluconacetobacter diazotrophicus PAl 5, complete genomeputative DNA recombinase6e-1686.3
NC_007644:280000:2846452846452860961452Moorella thermoacetica ATCC 39073, complete genome1e-1584.7
NC_002936:1395432:1398114139811413997781665Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein2e-1584
NC_013890:103807:1038071038071052641458Dehalococcoides sp. GT chromosome, complete genome3e-1584
NC_013552:207345:2073452073452090361692Dehalococcoides sp. VS, complete genomeresolvase domain protein, PinR type3e-1583.6
NC_010125:955863:9679829679829696491668Gluconacetobacter diazotrophicus PAl 5, complete genomePutative DNA recombinase2e-1480.9
CP002207:3520874:3536937353693735386251689Bacillus atrophaeus 1942, complete genomeresolvase domain protein2e-1480.9
NC_014639:3520874:3536937353693735386251689Bacillus atrophaeus 1942 chromosome, complete genomeresolvase domain-containing protein2e-1480.9
NC_014394:1815638:1825770182577018274041635Gallionella capsiferriformans ES-2 chromosome, complete genomeResolvase domain3e-1480.5
NC_013890:103807:1052911052911069101620Dehalococcoides sp. GT chromosome, complete genomeResolvase domain protein4e-1480.1
NC_011365:1171536:1189109118910911908451737Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeResolvase domain5e-1479.7
NC_009455:273519:3106353106353122811647Dehalococcoides sp. BAV1 chromosome, complete genomeresolvase domain-containing protein6e-1479.3
NC_016048:2873669:2897714289771428993811668Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase6e-1479.3
NC_020291:491000:4969934969934985491557Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomesite-specific recombinase, DNA invertase Pin2e-1377.8
NC_011365:1171536:1204634120463412063221689Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeResolvase domain3e-1377
NC_010125:74904:8646786467880771611Gluconacetobacter diazotrophicus PAl 5, complete genome4e-1376.6
NC_011365:1103927:1118847111884711205561710Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomerecombinase6e-1375.9
NC_014376:3547218:3566356356635635680141659Clostridium saccharolyticum WM1 chromosome, complete genomeRecombinase7e-1375.9
NC_008686:95326:9609496094977431650Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase8e-1375.5
NC_008686:95326:9763697636994291794Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase3e-1273.9
NC_009012:3823879:10410417231620Clostridium thermocellum ATCC 27405, complete genomeRecombinase5e-1273.2
NC_009012:1:10410417231620Clostridium thermocellum ATCC 27405, complete genomeRecombinase5e-1273.2
NC_013209:2582878:259456625945662595432867Acetobacter pasteurianus IFO 3283-01, complete genomeDNA resolvase5e-1272.8
NC_010125:955863:9861399861399878451707Gluconacetobacter diazotrophicus PAl 5, complete genomeputative resolvase7e-1272.4
NC_016027:2446806:2457542245754224592301689Gluconacetobacter xylinus NBRC 3288, complete genomeDNA resolvase7e-1272.4
NC_014614:2643203:2648799264879926504481650Clostridium sticklandii, complete genomesite-specific DNA recombinase (modular protein)2e-1171.2
NC_015697:506494:5307365307365322891554Lactobacillus reuteri SD2112 chromosome, complete genomephage integrase family site-specific recombinase2e-1171.2
NC_015278:176508:1893931893931910631671Aerococcus urinae ACS-120-V-Col10a chromosome, complete genomeresolvase, N-terminal domain protein2e-1171.2
NC_016627:4323370:4327812432781243293801569Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin2e-1171.2
NC_016627:4270949:4288360428836042899281569Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin2e-1171.2
NC_014410:800500:8355538355538371211569Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,Resolvase domain2e-1170.9
NC_010337:2793667:2815262281526228168361575Heliobacterium modesticaldum Ice1, complete genomeDNA recombinase, putative3e-1170.5
NC_010125:2884762:2898971289897129007551785Gluconacetobacter diazotrophicus PAl 5, complete genomeputative DNA recombinase3e-1170.5
NC_008686:1960034:1972763197276319744991737Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase3e-1170.1
NC_004668:2198027:2204960220496022065731614Enterococcus faecalis V583, complete genomesite-specific recombinase, resolvase family, putative4e-1170.1
NC_010003:449192:4643804643804659481569Petrotoga mobilis SJ95, complete genomeResolvase domain4e-1170.1
NC_015675:2247960:2274308227430822759331626Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRecombinase5e-1169.7
NC_011666:2109274:2112431211243121141161686Methylocella silvestris BL2, complete genomeResolvase domain protein5e-1169.7
NC_011830:2623346:2635003263500326365831581Desulfitobacterium hafniense DCB-2, complete genomeResolvase domain protein6e-1169.3
NC_015976:2187377:2193567219356721952611695Sphingobium sp. SYK-6, complete genomeputative recombinase9e-1168.9
NC_009442:908507:9248809248809264421563Streptococcus suis 05ZYH33 chromosome, complete genomeDNA recombinase9e-1168.9
NC_014393:1022843:1035656103565610372451590Clostridium cellulovorans 743B chromosome, complete genomeResolvase domain1e-1068.6
NC_015186:2197236:2286288228628822879221635Acidiphilium multivorum AIU301, complete genomeputative recombinase1e-1068.6
NC_015186:2197236:2265156226515622667961641Acidiphilium multivorum AIU301, complete genomeputative recombinase1e-1068.6
NC_015977:2309873:2331366233136623330421677Roseburia hominis A2-183 chromosome, complete genomesite-specific recombinase1e-1068.2
NC_009633:4097536:4102193410219341037581566Alkaliphilus metalliredigens QYMF chromosome, complete genomeresolvase domain-containing protein1e-1068.2
NC_009952:366959:3861373861373878131677Dinoroseobacter shibae DFL 12, complete genomerecombinase2e-1067.8
NC_014625:1187608:1204334120433412058811548Ketogulonicigenium vulgare Y25 chromosome, complete genomeresolvase2e-1067.8
NC_009720:5046861:5053666505366650554201755Xanthobacter autotrophicus Py2, complete genomeresolvase domain-containing protein2e-1067.8
NC_002936:149100:1491001491001506321533Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein2e-1067.8
NC_014376:3399366:3416589341658934182381650Clostridium saccharolyticum WM1 chromosome, complete genomeResolvase domain protein3e-1067
NC_018870:2316499:2329010232901023305781569Thermacetogenium phaeum DSM 12270 chromosome, complete genomeresolvase3e-1067
NC_018870:757416:8074028074028090751674Thermacetogenium phaeum DSM 12270 chromosome, complete genomeresolvase5e-1066.6
NC_014217:800406:8029988029988047251728Starkeya novella DSM 506 chromosome, complete genomeResolvase domain protein4e-1066.6
NC_015977:2445835:2452242245224224538281587Roseburia hominis A2-183 chromosome, complete genomehypothetical protein4e-1066.6
NC_014828:1987487:1994530199453019961131584Ethanoligenens harbinense YUAN-3 chromosome, complete genomeResolvase domain4e-1066.6
NC_009706:3882500:3890312389031238919611650Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein4e-1066.6
NC_010320:1268355:1311640131164013132111572Thermoanaerobacter sp. X514 chromosome, complete genomeresolvase domain-containing protein5e-1066.2
NC_014538:1598106:1601171160117116027421572Thermoanaerobacter sp. X513 chromosome, complete genomeResolvase domain-containing protein5e-1066.2
NC_016048:4163225:4185947418594741875961650Oscillibacter valericigenes Sjm18-20, complete genomeputative recombinase6e-1066.2
NC_009720:251703:2779762779762796311656Xanthobacter autotrophicus Py2, complete genomeresolvase domain-containing protein8e-1065.9
NC_012793:383612:3892203892203907161497Geobacillus sp. WCH70, complete genomeRecombinase7e-1065.9
NC_018866:1328623:1346529134652913481811653Dehalobacter sp. DCA chromosome, complete genomeSite-specific recombinase7e-1065.9
NC_009668:445134:4623194623194639741656Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequencerecombinase8e-1065.5
NC_009720:900884:9144479144479164351989Xanthobacter autotrophicus Py2, complete genomerecombinase8e-1065.5
NC_010337:98974:1140951140951157441650Heliobacterium modesticaldum Ice1, complete genomeresolvase, n-terminal:recombinase, putative9e-1065.5
NC_016627:2524307:2540263254026325418131551Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin1e-0964.7
NC_009089:581655:6044276044276060281602Clostridium difficile 630, complete genomeconjugative transposon site-specific recombinase2e-0964.7
NC_011837:3814000:3821815382181538233651551Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-0964.3
NC_015186:2931000:2938479293847929401401662Acidiphilium multivorum AIU301, complete genomeputative recombinase2e-0964.3
NC_012470:1390285:1409368140936814110501683Streptococcus equi subsp. zooepidemicus, complete genomesite-specific recombinase3e-0963.9
NC_012471:1197534:120630712063071207161855Streptococcus equi subsp. equi 4047, complete genomeconjugative transposon site-specific recombinase3e-0963.5
NC_015425:2528549:2528549252854925301351587Clostridium botulinum BKT015925 chromosome, complete genomesite-specific recombinase, resolvase family5e-0963.2
NC_006322:4149500:4174019417401941752631245Bacillus licheniformis ATCC 14580, complete genomeSpoIVCA7e-0962.8
NC_006270:4149004:4173904417390441751481245Bacillus licheniformis ATCC 14580, complete genomesite-specific DNA recombinase7e-0962.8
NC_010338:4530403:4545638454563845473771740Caulobacter sp. K31, complete genomeResolvase domain8e-0962.4
NC_008687:302450:3066933066933083511659Paracoccus denitrificans PD1222 chromosome 2, complete sequenceRecombinase1e-0862
NC_012914:1851102:1881221188122118829031683Paenibacillus sp. JDR-2, complete genomeResolvase domain protein2e-0860.8
NC_014828:1987487:1992758199275819945511794Ethanoligenens harbinense YUAN-3 chromosome, complete genomeResolvase domain2e-0860.8
NC_009720:583060:5876205876205892451626Xanthobacter autotrophicus Py2, complete genome3e-0860.5
NC_007296:1073784:1081126108112610828051680Streptococcus pyogenes MGAS6180, complete genomesite-specific recombinase4e-0860.1
NC_011958:735755:7525167525167541351620Rhodobacter sphaeroides KD131 chromosome 2, complete genomehypothetical protein4e-0859.7
NC_021177:6127431:6142510614251061449032394Streptomyces fulvissimus DSM 40593, complete genomePutative recombinase5e-0859.7
NC_014828:1019533:1033581103358110350531473Ethanoligenens harbinense YUAN-3 chromosome, complete genomeResolvase domain5e-0859.7
NC_009455:1025915:1030391103039110319051515Dehalococcoides sp. BAV1 chromosome, complete genomeresolvase domain-containing protein6e-0859.3
NC_010125:1051735:107408210740821074840759Gluconacetobacter diazotrophicus PAl 5, complete genome9e-0858.9
NC_013316:2033906:2068845206884520705181674Clostridium difficile R20291, complete genomehypothetical protein8e-0858.9
NC_010581:2999002:3031691303169130333341644Beijerinckia indica subsp. indica ATCC 9039, complete genome2e-0757.8
NC_015977:3424178:3471184347118434730311848Roseburia hominis A2-183 chromosome, complete genomesite-specific recombinase4e-0757
NC_015977:2874000:2893300289330028949851686Roseburia hominis A2-183 chromosome, complete genomesite-specific recombinase4e-0756.6
NC_014393:4775452:4836596483659648378281233Clostridium cellulovorans 743B chromosome, complete genomeResolvase domain4e-0756.6
NC_008530:1454118:1480338148033814819991662Lactobacillus gasseri ATCC 33323, complete genomeSite-specific recombinase, DNA invertase Pin related protein5e-0756.6
NC_016048:2678205:2695235269523526969171683Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase6e-0756.2
NC_016048:522637:5403145403145418341521Oscillibacter valericigenes Sjm18-20, complete genomeputative recombinase7e-0755.8
NC_003888:6103534:6118370611837061207602391Streptomyces coelicolor A3(2), complete genomerecombinase1e-0655.1
NC_008023:1070986:1092958109295810948891932Streptococcus pyogenes MGAS2096, complete genomeSite-specific recombinase2e-0654.7
NC_013170:917177:927289927289928113825Cryptobacterium curtum DSM 15641, complete genomesite-specific recombinase, DNA invertase Pin4e-0653.5
NC_013739:3006719:3019445301944530209741530Conexibacter woesei DSM 14684, complete genomeResolvase domain protein4e-0653.1
NC_007432:654904:6992176992177004581242Streptococcus agalactiae A909, complete genomeprophage LambdaSa04, site-specific recombinase, resolvase family5e-0653.1
NC_012781:700226:7191277191277207971671Eubacterium rectale ATCC 33656, complete genomecassette chromosome recombinase B5e-0653.1
NC_012781:2552723:2577962257796225796321671Eubacterium rectale ATCC 33656, complete genomecassette chromosome recombinase B5e-0653.1
NC_013316:2033906:2085969208596920876391671Clostridium difficile R20291, complete genomehypothetical protein6e-0652.8
NC_008009:1408000:141704414170441417667624Acidobacteria bacterium Ellin345, complete genomeResolvase-like8e-0652.4
NC_015977:3424178:3429807342980734313871581Roseburia hominis A2-183 chromosome, complete genomeRecombinase8e-0652.4