Pre_GI: BLASTP Hits

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Query: NC_003305:1035342:1058605 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1058605, End: 1059453, Length: 849

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015379:4426827:444064944406494441497849Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Glycine betaine ABC transporter, permease component3e-94344
NC_016625:171341:185846185846186688843Burkholderia sp. YI23 chromosome 2, complete sequenceABC transporter permease1e-68259
NC_004557:2475030:247973424797342480561828Clostridium tetani E88, complete genomeputative glycine-betaine binding permease protein2e-50199
NC_005791:837505:858699858699859532834Methanococcus maripaludis S2, complete genomeABC-type proline/glycine betaine transport system, permease component related protein2e-47189
NC_015847:909938:930852930852931685834Methanococcus maripaludis XI chromosome, complete genomebinding-protein dependent transport system inner membrane protein2e-47189
NC_003552:2634828:265639026563902657220831Methanosarcina acetivorans C2A, complete genomeglycine betaine/L-proline ABC transporter, permease2e-46186
NC_009615:4693164:469577346957734696588816Parabacteroides distasonis ATCC 8503 chromosome, complete genomeglycine betaine/L-proline transport system permease2e-44179
NC_015733:2581324:262021326202132621145933Pseudomonas putida S16 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component6e-44177
NC_010505:2657683:265864226586422659493852Methylobacterium radiotolerans JCM 2831, complete genomebinding-protein-dependent transport systems inner membrane component1e-43176
NC_007952:1587500:158958115895811590483903Burkholderia xenovorans LB400 chromosome 2, complete sequenceABC proline/glycine betaine transporter, inner membrane subunit2e-43176
NC_014222:1:147021470215538837Methanococcus voltae A3 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-43176
NC_008148:1567703:157570915757091576575867Rubrobacter xylanophilus DSM 9941, complete genomebinding-protein-dependent transport systems inner membrane component1e-42173
NC_015733:2581324:2584695258469525866471953Pseudomonas putida S16 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-42172
NC_016002:2591189:260637826063782607247870Pseudogulbenkiania sp. NH8B, complete genomeABC transporter permease9e-42170
NC_010002:2933909:2935066293506629362651200Delftia acidovorans SPH-1, complete genomebinding-protein-dependent transport systems inner membrane component1e-40167
NC_006347:3805500:380706738070673807891825Bacteroides fragilis YCH46, complete genomeglycine betaine/L-proline transport system permease1e-40167
NC_014210:5370868:5382898538289853841271230Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,binding-protein-dependent transport systems inner membrane component2e-39163
NC_019978:2036779:205052220505222051355834Halobacteroides halobius DSM 5150, complete genomeABC-type proline/glycine betaine transport system, permease component2e-39162
NC_008343:88184:942259422595076852Granulibacter bethesdensis CGDNIH1, complete genomeglycine betaine/L-proline transport system permease protein proW1e-38160
NC_009381:1783886:1821090182109018222441155Yersinia pestis Pestoides F chromosome, complete genomeglycine betaine transporter membrane protein6e-38157
NC_007492:3180480:3205029320502932071252097Pseudomonas fluorescens PfO-1, complete genomeGlycine betaine/L-proline ABC transporter, ATPase/permease fusion protein, putative1e-37157
NC_006582:1138987:116018511601851161021837Bacillus clausii KSM-K16, complete genomeglycine betaine ABC transporter permease1e-37156
NC_020207:2240115:2253560225356022552871728Enterococcus faecium NRRL B-2354, complete genomeGlycine betaine ABC transport permease OpuABC2e-37156
NC_005071:588541:609012609012609926915Prochlorococcus marinus str. MIT 9313, complete genomeABC transporter,membrane component, glycine betaine/proline family8e-37154
NC_002678:6061448:6061448606144860634271980Mesorhizobium loti MAFF303099, complete genomeABC transporter permease protein6e-36151
NC_015556:1188500:120853012085301209429900Pseudomonas fulva 12-X chromosome, complete genomebinding-protein-dependent transport systems inner membrane component9e-36150
NC_010334:4925936:492593649259364926835900Shewanella halifaxensis HAW-EB4, complete genomebinding-protein-dependent transport systems inner membrane component1e-35150
NC_014923:79370:856258562586512888Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completebinding-protein-dependent transport systems inner membrane component1e-35149
NC_008687:965152:989964989964990845882Paracoccus denitrificans PD1222 chromosome 2, complete sequencebinding-protein-dependent transport systems inner membrane component4e-35148
NC_003305:1035342:105775710577571058608852Agrobacterium tumefaciens str. C58 chromosome linear, completeABC transporter, membrane spanning protein1e-33143
NC_004193:3578710:359297735929773593837861Oceanobacillus iheyensis HTE831, complete genomeglycine betaine ABC transporter permease3e-32139
NC_016625:171341:186685186685187530846Burkholderia sp. YI23 chromosome 2, complete sequencehypothetical protein2e-32139
NC_015379:4426827:443980444398044440652849Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Glycine betaine ABC transporter, permease component2e-32139
NC_018643:857911:8579118579118600642154Alpha proteobacterium HIMB5 chromosome, complete genomeBinding-protein-dependent transport system inner membrane component3e-27122
NC_013406:5066769:510984751098475110548702Paenibacillus sp. Y412MC10 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component5e-1891.7
NC_014479:3245126:326511132651113265764654Bacillus subtilis subsp. spizizenii str. W23 chromosome, completecholine ABC transporter permease5e-1581.6
NC_016047:3406488:342286934228693423522654Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completecholine transport system permease opuBB7e-1581.3
NC_016047:3406488:342124934212493421920672Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completecholine transport system permease opuBD1e-1480.5
NC_010718:128423:143328143328144173846Natranaerobius thermophilus JW/NM-WN-LF, complete genomebinding-protein-dependent transport systems inner membrane component2e-1480.1
NC_014479:3245126:326349132634913264162672Bacillus subtilis subsp. spizizenii str. W23 chromosome, completecholine ABC transporter permease2e-1480.1
NC_011999:1567818:158318915831891583833645Macrococcus caseolyticus JCSC5402, complete genomeglycine betaine/carnitine/choline ABC transporter, permease protein2e-1480.1
NC_014479:3245126:326906732690673269741675Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeglycine betaine/carnitine/choline/choline sulfate ABC transporter permease2e-1479.7
NC_015589:3241364:324228832422883242905618Desulfotomaculum ruminis DSM 2154 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component3e-1479.3
NC_016047:3406488:342553434255343426202669Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeglycine betaine/carnitine/choline transport system permease OpuCD3e-1479.3
NC_013520:1905554:1927618192761819291501533Veillonella parvula DSM 2008, complete genomeSubstrate-binding region of ABC-type glycine betaine transport system5e-1478.6
NC_019745:3778017:379342137934213794260840Gloeocapsa sp. PCC 7428, complete genomenitrate ABC transporter, inner membrane subunit8e-1477.8
NC_009495:1759759:1776428177642817780141587Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeglycine betaine/L-proline ABC transporter permease/substrate-binding protein1e-1377.4
NC_004461:205068:213697213697214332636Staphylococcus epidermidis ATCC 12228, complete genomeopuCB protein1e-1377
NC_012883:1695703:169570316957031696320618Thermococcus sibiricus MM 739, complete genomeOsmoprotection protein (proW-1)2e-1376.6
NC_010718:128423:141500141500142150651Natranaerobius thermophilus JW/NM-WN-LF, complete genomebinding-protein-dependent transport systems inner membrane component4e-1375.5
NC_015425:2528549:2560000256000025615861587Clostridium botulinum BKT015925 chromosome, complete genomeputative glycine betaine/carnitine/choline ABC transporter4e-1375.5
NC_009727:1899876:1899876189987619014561581Coxiella burnetii Dugway 7E9-12, complete genomeABC transporter, quaternary amine uptake transporter (QAT) family, permease/periplasmic amine-binding protein2e-1273.2
NC_014315:2711852:2731698273169827332031506Nitrosococcus watsoni C-113 chromosome, complete genomeglycine betaine ABC transporter substrate-binding protein6e-1271.6
NC_014377:210888:220474220474221115642Thermosediminibacter oceani DSM 16646 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component7e-1271.2
NC_014915:308056:325858325858326487630Geobacillus sp. Y412MC52 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component1e-1170.5
NC_013411:1168049:118585111858511186480630Geobacillus sp. Y412MC61, complete genomebinding-protein-dependent transport systems inner membrane component1e-1170.5
NC_009328:293000:312108312108312737630Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeglycine betaine/L-proline ABC transporter permease1e-1170.5
NC_014121:2247913:226354522635452264255711Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative osmoprotectant transport system permease protein1e-1170.5
NC_016593:353505:379641379641380270630Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completebinding-protein-dependent transport system inner membrane component3e-1169.3
NC_006510:310212:341910341910342539630Geobacillus kaustophilus HTA426, complete genomehypothetical protein3e-1169.3
NC_016023:1143130:1143130114313011446591530Bacillus coagulans 36D1 chromosome, complete genomeglycine betaine ABC transporter periplasmic protein7e-1168.2
NC_011832:1399446:139883913988391399453615Candidatus Methanosphaerula palustris E1-9c, complete genomebinding-protein-dependent transport systems inner membrane component7e-1168.2
NC_009921:3666898:368591536859153686760846Frankia sp. EAN1pec, complete genomebinding-protein-dependent transport systems inner membrane component6e-1168.2
NC_014209:1580423:159879915987991599437639Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,binding-protein-dependent transport systems inner membrane component7e-1167.8
NC_007963:2644930:264611626461162646847732Chromohalobacter salexigens DSM 3043, complete genomebinding-protein-dependent transport systems inner membrane component3e-1066.2
NC_009512:1025365:102536510253651026078714Pseudomonas putida F1, complete genomebinding-protein-dependent transport systems inner membrane component4e-1065.5
NC_011837:1056888:106393210639321064723792Clostridium kluyveri NBRC 12016, complete genomehypothetical protein5e-1065.1
NC_014614:6115:392333923339889657Clostridium sticklandii, complete genomeGlycine betaine transport system permease protein / Glycine betaine-binding protein (fragment)1e-0963.9
NC_014206:345499:376734376734377363630Geobacillus sp. C56-T3 chromosome, complete genomebinding-protein-dependent transporters inner membrane component2e-0963.5
NC_016605:50695:6941669416709451530Pediococcus claussenii ATCC BAA-344 chromosome, complete genomesubstrate binding domain of ABC-type glycine betaine transport system family protein2e-0963.2
NC_011999:1567818:158473315847331585425693Macrococcus caseolyticus JCSC5402, complete genomeglycine betaine/carnitine/choline ABC transporter, permease protein2e-0962.8
NC_010572:1081236:110506311050631105926864Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ABC transporter permease protein6e-0961.6
NC_021175:881845:8818458818458833651521Streptococcus oligofermentans AS 1.3089, complete genomecholine ABC transporter permease7e-0961.2
NC_010474:19256:206672066721506840Synechococcus sp. PCC 7002 plasmid pAQ7, complete sequenceABC-type nitrate/sulfonate/bicarbonate transport system, permease8e-0961.2
NC_015565:1163148:116623311662331167036804Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeABC transporter integral membrane protein9e-0960.8
NC_008525:270310:2858552858552873841530Pediococcus pentosaceus ATCC 25745, complete genomeABC-type proline/glycine betaine transport system, permease and substrate binding protein2e-0859.7
NC_020260:1111130:111415211141521114883732Cronobacter sakazakii Sp291, complete genomeosmoprotectant uptake system permease YehW3e-0859.3
NC_012526:4462:2070020700218811182Deinococcus deserti VCD115, complete genomeputative proline/glycine betaine3e-0859.3
NC_020260:1111130:1112092111209211132251134Cronobacter sakazakii Sp291, complete genomeosmoprotectant uptake system permease YehY4e-0858.9
NC_010511:871905:879670879670880491822Methylobacterium sp. 4-46 chromosome, complete genomebinding-protein-dependent transport system inner membrane protein4e-0858.9
NC_009778:1070000:107206410720641072795732Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-0858.9
NC_009778:1070000:1070004107000410711371134Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-0858.5
NC_015559:1478114:149525914952591496050792Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeABC transporter integral membrane protein4e-0858.5
NC_008148:583030:608239608239608946708Rubrobacter xylanophilus DSM 9941, complete genomebinding-protein-dependent transport systems inner membrane component7e-0858.2
NC_013406:5066769:510821851082185108883666Paenibacillus sp. Y412MC10 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component7e-0858.2
NC_016627:2637226:263930926393092640169861Clostridium clariflavum DSM 19732 chromosome, complete genomenitrate/sulfonate/bicarbonate ABC transporter permease8e-0857.8
NC_008752:2334511:235697423569742357921948Acidovorax avenae subsp. citrulli AAC00-1, complete genomenitrate ABC transporter, inner membrane subunit1e-0757
NC_013316:2623199:264151726415172642260744Clostridium difficile R20291, complete genome1e-0757
NC_009792:2688747:271131327113132711945633Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-0757
NC_010623:72500:912379123792070834Burkholderia phymatum STM815 chromosome 2, complete sequencebinding-protein-dependent transport systems inner membrane component2e-0756.6
NC_005070:2374850:238897623889762389755780Synechococcus sp. WH 8102, complete genomeputative cyanate ABC transporter3e-0756.2
NC_007576:1854136:1854136185413618556621527Lactobacillus sakei subsp. sakei 23K, complete genomePutative glycine/betaine/carnitine/choline ABC transporter, substrate binding and membrane-spanning subunits3e-0755.8
NC_014121:2247913:226518222651822265829648Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative osmoprotectant transport system permease protein3e-0755.8
NC_015172:951550:955589955589956377789Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component3e-0755.8
NC_011837:1056888:105993710599371060764828Clostridium kluyveri NBRC 12016, complete genomehypothetical protein4e-0755.5
NC_015589:3241364:324292832429283243569642Desulfotomaculum ruminis DSM 2154 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component4e-0755.5
NC_014500:2934232:293423229342322935023792Dickeya dadantii 3937 chromosome, complete genomealkanesulfonates transport system permease4e-0755.5
NC_021066:2197490:219864621986462199437792Raoultella ornithinolytica B6, complete genomealkanesulfonate transporter permease subunit5e-0755.5
NC_013457:979102:996543996543997343801Vibrio sp. Ex25 chromosome 2, complete genomehydroxymethylpyrimidine ABC transporter transmembrane component8e-0754.7
NC_014121:2745097:274625227462522747043792Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completealkanesulfonate transporter permease subunit8e-0754.7
NC_005043:1143557:1156121115612111578961776Chlamydophila pneumoniae TW-183, complete genomeABC transporter7e-0754.7
NC_002491:1147169:1156824115682411585991776Chlamydophila pneumoniae J138, complete genomeABC transporter permease7e-0754.7
NC_000922:1147855:1160418116041811621931776Chlamydophila pneumoniae CWL029, complete genomeABC transporter permease7e-0754.7
NC_002179:904518:9092219092219109961776Chlamydophila pneumoniae AR39, complete genomeABC transporter, permease protein, putative7e-0754.7
NC_016628:537137:569671569671570471801Vibrio furnissii NCTC 11218 chromosome 2, complete sequencenitrate/sulfonate/bicarbonate ABC transporter permease1e-0654.3
NC_017285:913000:9163859163859181601776Chlamydophila pneumoniae LPCoLN chromosome, complete genomeABC transporter permease9e-0754.3
NC_012883:1695703:169630716963071696936630Thermococcus sibiricus MM 739, complete genomeOsmoprotection protein (proW-2)9e-0754.3
NC_011894:3029964:307557230755723076393822Methylobacterium nodulans ORS 2060, complete genomebinding-protein-dependent transport systems inner membrane component1e-0653.9
NC_009717:271385:284242284242285015774Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequencebinding-protein-dependent transport systems inner membrane component1e-0653.9
NC_017179:2539031:256915025691502569779630Clostridium difficile BI1, complete genomeABC transporter permease2e-0653.5
NC_018515:4196409:422021942202194220863645Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeproline/glycine betaine ABC transporter permease2e-0653.5
NC_014733:107394:134470134470135264795Methylovorus sp. MP688 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-0653.1
NC_015859:1898693:189869318986931899628936Corynebacterium variabile DSM 44702 chromosome, complete genomeABC transport system permease3e-0652.8
NC_014640:4193193:421082542108254211676852Achromobacter xylosoxidans A8 chromosome, complete genomebinding-protein-dependent transporter inner membrane component family protein 473e-0652.8
NC_007644:469181:470251470251471039789Moorella thermoacetica ATCC 39073, complete genomeBinding-protein-dependent transport systems inner membrane component3e-0652.4
NC_018515:4196409:422204142220414222697657Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeproline/glycine betaine ABC transporter permease4e-0652
NC_013520:1936209:194300319430031943755753Veillonella parvula DSM 2008, complete genomebinding-protein-dependent transport systems inner membrane component5e-0652
NC_004461:205068:215313215313215960648Staphylococcus epidermidis ATCC 12228, complete genomeopuCD protein7e-0651.6
NC_009925:647752:652404652404653033630Acaryochloris marina MBIC11017, complete genomebinding-protein-dependent inner membrane transport system, putative9e-0651.2
NC_015259:1512563:152895715289571529790834Polymorphum gilvum SL003B-26A1 chromosome, complete genomeProbable aliphatic sulfonate ABC transporter, permease protein1e-0550.8