Pre_GI Gene

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Host: NC_007952 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007952:1587500 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
158841015895881179ABC prolineglycine betaine transporter ATPase subunitQuickGO ontologyBLASTP
15895811590483903ABC prolineglycine betaine transporter inner membrane subunitQuickGO ontologyBLASTP
15904911591489999transcriptional regulator AraC familyQuickGO ontologyBLASTP
15915931592528936ABC prolineglycine betaine transporter periplasmic ligand binding proteinQuickGO ontologyBLASTP
15925361592904369hypothetical protein
15931641593679516hypothetical proteinBLASTP
15939691594484516hypothetical proteinBLASTP
15945381595068531hypothetical protein
15950651595517453hypothetical proteinBLASTP
159554515968341290Transposase TnpAQuickGO ontologyBLASTP
15968561597368513Lipoprotein signal peptidase LspAQuickGO ontologyBLASTP
15973721598268897heavy metalH antiporter CDF familyQuickGO ontologyBLASTP
15983641598771408Transcriptional regulator MerR familyQuickGO ontologyBLASTP
15988531599641789hypothetical proteinBLASTP
159968416007661083transcriptional regulator AraC familyQuickGO ontologyBLASTP
160105916024531395Iron-sulfur-dependent L-serine dehydratase single chain formQuickGO ontologyBLASTP
160249716037411245Sarcosine oxidase beta subunit heterotetramericQuickGO ontologyBLASTP
16037631604125363SoxDQuickGO ontologyBLASTP
160412216071243003Sarcosine oxidase alpha subunit heterotetramericQuickGO ontologyBLASTP
16071141607770657Sarcosine oxidase gamma subunitQuickGO ontologyBLASTP