Pre_GI: BLASTP Hits

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Query: NC_003063:304962:330953 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 330953, End: 331756, Length: 804

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011894:3029964:307557230755723076393822Methylobacterium nodulans ORS 2060, complete genomebinding-protein-dependent transport systems inner membrane component2e-31136
NC_012914:5618000:564387556438755644627753Paenibacillus sp. JDR-2, complete genomebinding-protein-dependent transport systems inner membrane component2e-30132
NC_010511:871905:879670879670880491822Methylobacterium sp. 4-46 chromosome, complete genomebinding-protein-dependent transport system inner membrane protein3e-29129
NC_010572:1081236:110506311050631105926864Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ABC transporter permease protein9e-27120
NC_009921:3666898:368591536859153686760846Frankia sp. EAN1pec, complete genomebinding-protein-dependent transport systems inner membrane component4e-25115
NC_003030:1510000:154295015429501543702753Clostridium acetobutylicum ATCC 824, complete genomeABC transporter, permease component5e-25114
NC_008148:3024867:304284130428413043611771Rubrobacter xylanophilus DSM 9941, complete genomebinding-protein-dependent transport systems inner membrane component7e-24111
NC_014171:723155:747020747020747772753Bacillus thuringiensis BMB171 chromosome, complete genomehydroxymethylpyrimidine transport system permease2e-23109
NC_015559:1478114:149525914952591496050792Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeABC transporter integral membrane protein4e-23108
NC_017075:4259460:427775342777534278523771Rubrivivax gelatinosus IL144, complete genomeABC transporter permease1e-22107
NC_005945:754517:753768753768754520753Bacillus anthracis str. Sterne, complete genomeABC transporter, permease protein, putative9e-23107
NC_002696:2829002:285313728531372853895759Caulobacter crescentus CB15, complete genomeABC transporter, permease protein, putative1e-21103
NC_014829:4565467:456622545662254566974750Bacillus cellulosilyticus DSM 2522 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-21103
NC_014931:4985500:499939949993995000169771Variovorax paradoxus EPS chromosome, complete genomebinding-protein-dependent transport systems inner membrane component5e-21101
NC_014623:7133149:714453371445337145288756Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeABC transporter permease3e-2099
NC_018720:357716:380916380916381704789Bifidobacterium asteroides PRL2011 chromosome, complete genomeABC transporter, permease protein1e-1997.1
NC_002678:7004370:702902470290247029779756Mesorhizobium loti MAFF303099, complete genomeABC transporter, permease protein1e-1997.1
NC_010623:72500:912379123792070834Burkholderia phymatum STM815 chromosome 2, complete sequencebinding-protein-dependent transport systems inner membrane component3e-1995.5
NC_013457:979102:996543996543997343801Vibrio sp. Ex25 chromosome 2, complete genomehydroxymethylpyrimidine ABC transporter transmembrane component5e-1994.7
NC_020211:3398281:342261534226153423382768Serratia marcescens WW4, complete genomeABC transporter7e-1994.4
NC_015276:1531159:153680015368001537759960Marinomonas mediterranea MMB-1 chromosome, complete genomeABC-type transporter, integral membrane subunit1e-1893.6
NC_012108:481657:498861498861499610750Desulfobacterium autotrophicum HRM2, complete genomeABC-type transporter, permease protein4e-1892
NC_013515:550464:553101553101553850750Streptobacillus moniliformis DSM 12112, complete genomebinding-protein-dependent transport systems inner membrane component4e-1891.7
NC_016627:1807866:182665718266571827475819Clostridium clariflavum DSM 19732 chromosome, complete genomenitrate/sulfonate/bicarbonate ABC transporter permease9e-1890.9
NC_014147:1200984:120661712066171207369753Moraxella catarrhalis RH4 chromosome, complete genomeABC transporter permease protein2e-1789.7
NC_020210:2133996:218123921812392182099861Geobacillus sp. GHH01, complete genomeputative aliphatic sulfonate ABC transporter permease4e-1788.6
NC_018644:137755:164269164269164931663Alpha proteobacterium HIMB59 chromosome, complete genomeBinding-protein-dependent transport system inner membrane component2e-1686.3
NC_008148:3024867:304361230436123044412801Rubrobacter xylanophilus DSM 9941, complete genomebinding-protein-dependent transport systems inner membrane component3e-1685.9
NC_008278:132000:139478139478140227750Frankia alni ACN14a, complete genomehypothetical protein; putative membrane protein; putative permease of ABC transporter4e-1685.5
NC_004463:60225:821388213882956819Bradyrhizobium japonicum USDA 110, complete genomeABC transporter permease protein4e-1685.1
NC_016628:537137:569671569671570471801Vibrio furnissii NCTC 11218 chromosome 2, complete sequencenitrate/sulfonate/bicarbonate ABC transporter permease6e-1684.7
NC_016048:522637:525277525277526092816Oscillibacter valericigenes Sjm18-20, complete genomeputative ABC transporter permease protein1e-1584
NC_017285:913000:9163859163859181601776Chlamydophila pneumoniae LPCoLN chromosome, complete genomeABC transporter permease2e-1583.2
NC_002179:904518:9092219092219109961776Chlamydophila pneumoniae AR39, complete genomeABC transporter, permease protein, putative3e-1582.8
NC_000922:1147855:1160418116041811621931776Chlamydophila pneumoniae CWL029, complete genomeABC transporter permease3e-1582.8
NC_002491:1147169:1156824115682411585991776Chlamydophila pneumoniae J138, complete genomeABC transporter permease3e-1582.8
NC_005043:1143557:1156121115612111578961776Chlamydophila pneumoniae TW-183, complete genomeABC transporter3e-1582.4
NC_014829:1475000:147843514784351479241807Bacillus cellulosilyticus DSM 2522 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component8e-1580.9
NC_020908:1920169:193948519394851940228744Octadecabacter arcticus 238, complete genomeABC transporter permease protein9e-1580.9
NC_016943:4194002:424408742440874245025939Blastococcus saxobsidens DD2, complete genomeputative Binding-protein-dependent transport systems inner membrane component2e-1479.7
NC_021066:2197490:219864621986462199437792Raoultella ornithinolytica B6, complete genomealkanesulfonate transporter permease subunit6e-1478.2
NC_012914:5372712:539345253934525394267816Paenibacillus sp. JDR-2, complete genomebinding-protein-dependent transport systems inner membrane component8e-1477.8
NC_019970:813917:831740831740832549810Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system, permease component1e-1377
NC_013316:2623199:264151726415172642260744Clostridium difficile R20291, complete genome1e-1377
NC_014121:2745097:274625227462522747043792Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completealkanesulfonate transporter permease subunit2e-1376.6
NC_012914:5372712:539255953925595393455897Paenibacillus sp. JDR-2, complete genomebinding-protein-dependent transport systems inner membrane component2e-1376.3
NC_016627:2637226:263930926393092640169861Clostridium clariflavum DSM 19732 chromosome, complete genomenitrate/sulfonate/bicarbonate ABC transporter permease2e-1376.3
NC_014500:2934232:293423229342322935023792Dickeya dadantii 3937 chromosome, complete genomealkanesulfonates transport system permease2e-1376.3
NC_017179:2539031:256915025691502569779630Clostridium difficile BI1, complete genomeABC transporter permease2e-1375.9
NC_016935:4813916:481600948160094816845837Paenibacillus mucilaginosus 3016 chromosome, complete genomebinding-protein-dependent transport system inner membrane protein3e-1375.9
NC_009439:4734237:474580747458074746637831Pseudomonas mendocina ymp, complete genomebinding-protein-dependent transport systems inner membrane component3e-1375.5
NC_015859:1898693:189869318986931899628936Corynebacterium variabile DSM 44702 chromosome, complete genomeABC transport system permease5e-1375.1
NC_016514:891772:933689933689934516828Enterobacter cloacae EcWSU1 chromosome, complete genomeTaurine transport system permease protein tauC1e-1273.9
NC_013510:517878:532671532671533492822Thermomonospora curvata DSM 43183, complete genomebinding-protein-dependent transport systems inner membrane component1e-1273.9
NC_014376:3214222:322811232281123228909798Clostridium saccharolyticum WM1 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component1e-1273.6
NC_013520:1936209:194300319430031943755753Veillonella parvula DSM 2008, complete genomebinding-protein-dependent transport systems inner membrane component1e-1273.6
NC_015259:1512563:152895715289571529790834Polymorphum gilvum SL003B-26A1 chromosome, complete genomeProbable aliphatic sulfonate ABC transporter, permease protein2e-1273.2
NC_010508:1705500:170675717067571707569813Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencebinding-protein-dependent transport systems inner membrane component3e-1272.4
NC_008542:1727000:172823717282371729049813Burkholderia cenocepacia HI2424 chromosome 1, complete sequencebinding-protein-dependent transport systems inner membrane component3e-1272.4
NC_008060:1182378:118355211835521184364813Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencebinding-protein-dependent transport systems inner membrane component3e-1272.4
NC_013421:1954915:195491519549151955688774Pectobacterium wasabiae WPP163, complete genomebinding-protein-dependent transport systems inner membrane component3e-1272.4
NC_016584:1912000:191311419131141913905792Desulfosporosinus orientis DSM 765 chromosome, complete genomenitrate/sulfonate/bicarbonate ABC transporter permease9e-1270.9
NC_011837:1056888:105993710599371060764828Clostridium kluyveri NBRC 12016, complete genomehypothetical protein1e-1170.9
NC_007907:2830574:283883128388312839589759Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-1170.5
NC_011832:1148859:117477911747791175618840Candidatus Methanosphaerula palustris E1-9c, complete genomebinding-protein-dependent transport systems inner membrane component2e-1170.1
NC_017297:3546467:354916135491613549703543Clostridium botulinum F str. 230613 chromosome, complete genomeglycine betaine/proline ABC transporter permease/substrate-binding protein2e-1169.7
NC_009255:1105786:111302611130261113838813Burkholderia vietnamiensis G4 chromosome 2, complete sequencebinding-protein-dependent transport system inner membrane protein3e-1169.3
NC_010520:3526883:353502735350273535569543Clostridium botulinum A3 str. Loch Maree, complete genomeABC transporter, permease protein3e-1168.9
NC_014829:1475000:147924214792421480129888Bacillus cellulosilyticus DSM 2522 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component4e-1168.9
NC_018664:2638102:264387826438782644672795Clostridium acidurici 9a chromosome, complete genomealiphatic sulfonates ABC transporter permease protein SsuC4e-1168.6
NC_016830:6499234:649923464992346500016783Pseudomonas fluorescens F113 chromosome, complete genomeprotein SsuC6e-1168.2
NC_015565:1163148:116623311662331167036804Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeABC transporter integral membrane protein8e-1167.8
NC_014614:86213:913679136792236870Clostridium sticklandii, complete genomeSsuC7e-1167.8
NC_008595:2432184:245572724557272456554828Mycobacterium avium 104, complete genomeputative aliphatic sulfonates transport permease protein SsuC7e-1167.8
NC_016023:1839503:184165118416511842409759Bacillus coagulans 36D1 chromosome, complete genomeABC transporter integral membrane protein1e-1067
NC_014377:1298806:130218413021841302924741Thermosediminibacter oceani DSM 16646 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-1066.6
NC_013406:1217385:126795212679521268731780Paenibacillus sp. Y412MC10 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component3e-1065.9
NC_016943:4194002:425137842513784252226849Blastococcus saxobsidens DD2, complete genomeABC transporter; permease protein5e-1065.1
NC_011757:1246000:128154012815401282421882Methylobacterium chloromethanicum CM4, complete genomebinding-protein-dependent transport systems inner membrane component5e-1065.1
NC_015275:521436:533624533624534400777Clostridium lentocellum DSM 5427 chromosome, complete genomeABC-type transporter, integral membrane subunit6e-1064.7
NC_019745:3778017:379342137934213794260840Gloeocapsa sp. PCC 7428, complete genomenitrate ABC transporter, inner membrane subunit9e-1064.3
NC_009439:4734237:473533947353394736133795Pseudomonas mendocina ymp, complete genomebinding-protein-dependent transport systems inner membrane component1e-0963.9
NC_021182:4186515:419716441971644197994831Clostridium pasteurianum BC1, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system, permease component1e-0963.5
NC_015856:3170771:317220831722083173077870Collimonas fungivorans Ter331 chromosome, complete genomealkanesulfonates transport system permease2e-0963.5
NC_015589:3241364:324228832422883242905618Desulfotomaculum ruminis DSM 2154 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-0962.8
NC_010085:1174917:117535611753561176114759Nitrosopumilus maritimus SCM1, complete genomebinding-protein-dependent transport systems inner membrane component2e-0962.8
NC_014733:107394:134470134470135264795Methylovorus sp. MP688 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component3e-0962.8
NC_018750:7653000:767445576744557675315861Streptomyces venezuelae ATCC 10712, complete genomeABC transporter permease3e-0962.4
NC_010510:409469:424812424812425699888Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completebinding-protein-dependent transport systems inner membrane component3e-0962.4
NC_014640:4193193:421082542108254211676852Achromobacter xylosoxidans A8 chromosome, complete genomebinding-protein-dependent transporter inner membrane component family protein 473e-0962.4
NC_015276:1531159:153589815358981536803906Marinomonas mediterranea MMB-1 chromosome, complete genomeABC-type transporter, integral membrane subunit3e-0962.4
NC_017168:3192817:319474831947483195569822Yersinia pestis A1122 chromosome, complete genomeputative transport system permease5e-0961.6
NC_014839:12519:241362413624882747Pantoea sp. At-9b plasmid pPAT9B02, complete sequencebinding-protein-dependent transport systems inner membrane component6e-0961.6
NC_013716:1298932:1298932129893213005001569Citrobacter rodentium ICC168, complete genomeABC transporter, permease component1e-0860.8
NC_012988:4075429:407542940754294076304876Methylobacterium extorquens DM4, complete genomeABC transporter1e-0860.8
NC_021182:4186515:420359942035994204381783Clostridium pasteurianum BC1, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system, permease component1e-0860.5
NC_011837:1056888:1062828106282810638981071Clostridium kluyveri NBRC 12016, complete genomehypothetical protein1e-0860.5
NC_014654:895298:899199899199899951753Halanaerobium sp. 'sapolanicus' chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-0860.1
NC_015136:1301576:132543913254391326269831Burkholderia sp. CCGE1001 chromosome 1, complete sequencenitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein4e-0858.5
NC_013421:4714478:4755899475589947575091611Pectobacterium wasabiae WPP163, complete genomebinding-protein-dependent transport systems inner membrane component4e-0858.5
NC_020126:4084114:414145741414574142266810Myxococcus stipitatus DSM 14675, complete genomeputative aliphatic sulfonates ABC transporter permease5e-0858.5
NC_007644:469181:470251470251471039789Moorella thermoacetica ATCC 39073, complete genomeBinding-protein-dependent transport systems inner membrane component6e-0858.2
NC_005791:1173000:118387311838731184634762Methanococcus maripaludis S2, complete genometransport permease protein7e-0857.8
NC_015847:1261276:127124712712471272008762Methanococcus maripaludis XI chromosome, complete genomebinding-protein-dependent transport systems inner membrane component7e-0857.8
NC_015172:951550:955589955589956377789Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component1e-0757.4
NC_011832:1399446:139883913988391399453615Candidatus Methanosphaerula palustris E1-9c, complete genomebinding-protein-dependent transport systems inner membrane component1e-0757.4
NC_013411:597235:597821597821598630810Geobacillus sp. Y412MC61, complete genomebinding-protein-dependent transport systems inner membrane component9e-0857.4
NC_014915:2963500:300530530053053006114810Geobacillus sp. Y412MC52 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component9e-0857.4
NC_004461:205068:215313215313215960648Staphylococcus epidermidis ATCC 12228, complete genomeopuCD protein1e-0757
NC_014479:3245126:326349132634913264162672Bacillus subtilis subsp. spizizenii str. W23 chromosome, completecholine ABC transporter permease2e-0756.6
NC_014034:1507047:151154715115471512371825Rhodobacter capsulatus SB1003 chromosome, complete genomeABC transporter permease2e-0756.6
NC_013510:1637730:165631716563171657126810Thermomonospora curvata DSM 43183, complete genomebinding-protein-dependent transport systems inner membrane component3e-0755.8
NC_005070:2374850:238897623889762389755780Synechococcus sp. WH 8102, complete genomeputative cyanate ABC transporter3e-0755.8
NC_010718:128423:143328143328144173846Natranaerobius thermophilus JW/NM-WN-LF, complete genomebinding-protein-dependent transport systems inner membrane component4e-0755.5
NC_009135:330628:354277354277355038762Methanococcus maripaludis C5, complete genomebinding-protein-dependent transport systems inner membrane component5e-0755.1
NC_016047:3406488:342553434255343426202669Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeglycine betaine/carnitine/choline transport system permease OpuCD5e-0755.1
NC_014479:3245126:326906732690673269741675Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeglycine betaine/carnitine/choline/choline sulfate ABC transporter permease5e-0755.1
NC_016627:2637226:264015326401532640938786Clostridium clariflavum DSM 19732 chromosome, complete genomenitrate/sulfonate/bicarbonate ABC transporter permease6e-0754.7
NC_009495:1759759:1776428177642817780141587Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeglycine betaine/L-proline ABC transporter permease/substrate-binding protein7e-0754.7
NC_016605:50695:6941669416709451530Pediococcus claussenii ATCC BAA-344 chromosome, complete genomesubstrate binding domain of ABC-type glycine betaine transport system family protein7e-0754.7
NC_018515:4196409:422021942202194220863645Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeproline/glycine betaine ABC transporter permease9e-0754.3
NC_009637:438037:453317453317454078762Methanococcus maripaludis C7 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component8e-0754.3
NC_016047:3406488:342124934212493421920672Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completecholine transport system permease opuBD8e-0754.3
NC_015660:739040:738247738247739056810Geobacillus thermoglucosidasius C56-YS93 chromosome, completeABC transporter integral membrane protein8e-0754.3
NC_012912:2998511:2998511299851130000971587Dickeya zeae Ech1591, complete genomebinding-protein-dependent transport systems inner membrane component1e-0653.9
NC_015136:1301576:132629113262911327148858Burkholderia sp. CCGE1001 chromosome 1, complete sequencenitrate/sulfonate/bicarbonate ABC transporter permease1e-0653.9
NC_011145:4628000:465062946506294651366738Anaeromyxobacter sp. K, complete genomebinding-protein-dependent transport systems inner membrane component1e-0653.9
NC_015425:2528549:2560000256000025615861587Clostridium botulinum BKT015925 chromosome, complete genomeputative glycine betaine/carnitine/choline ABC transporter1e-0653.9
NC_013406:5066769:510984751098475110548702Paenibacillus sp. Y412MC10 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-0653.1
NC_009975:1374500:137795713779571378718762Methanococcus maripaludis C6, complete genomebinding-protein-dependent transport systems inner membrane component2e-0653.1
NC_014733:107394:133650133650134456807Methylovorus sp. MP688 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-0652.8
NC_015437:1038476:105861610586161059353738Selenomonas sputigena ATCC 35185 chromosome, complete genomeABC-type transporter, integral membrane subunit2e-0652.8
NC_015942:63440:721447214473028885Acidithiobacillus ferrivorans SS3 chromosome, complete genomeABC transporter integral membrane subunit4e-0652.4
NC_013894:672840:680159680159680923765Thermocrinis albus DSM 14484 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component3e-0652.4
NC_013520:1905554:1927618192761819291501533Veillonella parvula DSM 2008, complete genomeSubstrate-binding region of ABC-type glycine betaine transport system3e-0652.4
NC_016625:171341:186685186685187530846Burkholderia sp. YI23 chromosome 2, complete sequencehypothetical protein3e-0652.4
NC_015589:870804:882372882372883175804Desulfotomaculum ruminis DSM 2154 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component4e-0652
NC_009712:669647:701400701400702161762Candidatus Methanoregula boonei 6A8, complete genomebinding-protein-dependent transport systems inner membrane component4e-0652
NC_018664:2279687:2298501229850122995051005Clostridium acidurici 9a chromosome, complete genomeputative nitrate/sulfonate/bicarbonate ABC transporter permease protein5e-0651.6
NC_015711:2008578:203112320311232031884762Myxococcus fulvus HW-1 chromosome, complete genomeputative aliphatic sulfonates ABC transporter permease7e-0651.2
NC_004461:205068:213697213697214332636Staphylococcus epidermidis ATCC 12228, complete genomeopuCB protein8e-0651.2
NC_009634:547995:564167564167564928762Methanococcus vannielii SB chromosome, complete genomebinding-protein-dependent transport systems inner membrane component8e-0650.8