Pre_GI: BLASTP Hits

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Query: NC_000962:1870842:1870842 Mycobacterium tuberculosis H37Rv, complete genome

Start: 1870842, End: 1871354, Length: 513

Host Lineage: Mycobacterium tuberculosis; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain has been derived from the original human-lung H37 isolate in 1934, and has been used extensively worldwide in biomedical research. Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. This bacterium is the causative agent of tuberculosis - a chronic infectious disease with a growing incidence worldwide. It infects 1.7 billion people a year (~33% of the entire world population) and causes over 3 million deaths/year. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. The sluggish growth rate is a result of the tough cell wall that resists the passage of nutrients into the cell and inhibits waste products to be excreted out of the cell. The specialized cell envelope of this organism resembles a modified Gram positive cell wall. It also contains complex fatty acids, such as mycolic acids, that cause the waxy appearance and impermeability of the envelope. These acids are found bound to the cell envelope, but also form cord factors when linked with a carbohydrate component to form a cord-like structure. Primary infection occurs by inhalation of the organism in droplets that are aerosolized by an infected person. The organism initially replicates in cells of the terminal airways, after which it is taken up by, and replicates in, alveolar macrophages. Macrophages distribute the organism to other areas of the lungs and the regional lymph nodes. Once a cell-mediated hypersensitivity immune response develops, replication of the organism decreases and the bacteria become restricted to developing granulomas.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009565:1866214:186621418662141866744531Mycobacterium tuberculosis F11, complete genomearginine repressor argR8e-86315
NC_012207:1848091:184901118490111849523513Mycobacterium bovis BCG str. Tokyo 172, complete genomearginine repressor9e-86315
NC_008769:1876109:187610918761091876621513Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomeputative Arginine repressor argR9e-86315
NC_009525:1872360:187236018723601872872513Mycobacterium tuberculosis H37Ra, complete genomearginine repressor9e-86315
NC_002945:1856228:185622818562281856740513Mycobacterium bovis AF2122/97, complete genomearginine repressor9e-86315
NC_016804:1846388:184638818463881846900513Mycobacterium bovis BCG str. Mexico chromosome, complete genomeArginine repressor9e-86315
NC_017026:1865046:186596618659661866478513Mycobacterium tuberculosis RGTB327 chromosome, complete genomearginine repressor9e-86315
NC_019950:1870863:187178318717831872295513Mycobacterium canettii CIPT 140060008 complete genomePutative arginine repressor ArgR (AHRC)2e-84310
NC_002755:1859630:186174918617491862354606Mycobacterium tuberculosis CDC1551, complete genomearginine repressor3e-84310
NC_015848:1896660:189758018975801898092513Mycobacterium canettii CIPT 140010059, complete genomeputative arginine repressor argR (AHRC)1e-81301
NC_013510:2521186:252211825221182522681564Thermomonospora curvata DSM 43183, complete genomearginine repressor, ArgR1e-33142
NC_015588:1463628:146593314659331466442510Isoptericola variabilis 225 chromosome, complete genomearginine repressor, ArgR7e-32136
NC_012803:1552122:157624715762471576735489Micrococcus luteus NCTC 2665, complete genometranscriptional regulator, ArgR family2e-23108
NC_021064:1705961:171229617122961712874579Propionibacterium avidum 44067, complete genomearginine repressor4e-21100
NC_014638:1333976:135390813539081354426519Bifidobacterium bifidum PRL2010 chromosome, complete genomearginine repressor ArgR2e-2098.6
NC_014616:1296287:131453313145331315051519Bifidobacterium bifidum S17 chromosome, complete genomeArginine repressor, ArgR2e-2098.6
NC_011969:3879412:390169339016933902142450Bacillus cereus Q1 chromosome, complete genomearginine repressor9e-2096.3
NC_011725:4159000:417913941791394179588450Bacillus cereus B4264 chromosome, complete genomearginine repressor ArgR8e-2096.3
NC_016593:2447938:248062124806212481070450Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completearginine repressor4e-1890.9
NC_016047:2480921:250297525029752503424450Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completearginine repressor3e-1787.4
NC_017096:260333:271685271685272140456Caldisericum exile AZM16c01, complete genomearginine repressor6e-1786.7
NC_008536:3160540:317707531770753177512438Solibacter usitatus Ellin6076, complete genomearginine repressor, ArgR4e-1580.5
NC_014734:2285762:230520523052052305675471Paludibacter propionicigenes WB4 chromosome, complete genomearginine repressor, argr6e-1580.1
NC_015500:2112975:213688721368872137360474Treponema brennaborense DSM 12168 chromosome, complete genomearginine repressor, ArgR7e-1579.7
NC_018720:1336839:136761313676131368149537Bifidobacterium asteroides PRL2011 chromosome, complete genomearginine repressor8e-1579.7
NC_014363:645397:648880648880649317438Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, ArgR family2e-1478.6
NC_010516:1999500:200689320068932007345453Clostridium botulinum B1 str. Okra, complete genomearginine repressor2e-1478.2
NC_009699:2056500:206395420639542064406453Clostridium botulinum F str. Langeland chromosome, complete genomearginine repressor2e-1478.2
NC_017297:2054000:206405220640522064504453Clostridium botulinum F str. 230613 chromosome, complete genomearginine repressor2e-1478.2
NC_010520:2061502:207171620717162072168453Clostridium botulinum A3 str. Loch Maree, complete genomearginine repressor1e-1375.9
NC_014657:1193985:120863612086361209094459Caldicellulosiruptor owensensis OL chromosome, complete genomearginine repressor, argr1e-1375.5
NC_015433:791364:795913795913796386474Streptococcus suis ST3 chromosome, complete genomearginine repressor3e-1374.3
NC_013853:956144:957666957666958136471Streptococcus mitis B6, complete genomearginine repressor1e-1168.9
NC_012526:157000:171683171683172156474Deinococcus deserti VCD115, complete genomeputative Arginine repressor6e-1167
NC_015391:2059191:206329720632972063800504Carnobacterium sp. 17-4 chromosome, complete genometranscriptional repressor1e-1065.9
NC_008321:3964414:398810039881003988570471Shewanella sp. MR-4, complete genomearginine repressor, ArgR4e-1064.3
NC_015577:1462874:148762914876291488102474Treponema azotonutricium ZAS-9 chromosome, complete genometranscriptional regulator6e-0960.5
NC_016641:5808113:583874358387435839195453Paenibacillus terrae HPL-003 chromosome, complete genomearginine repressor7e-0959.7
NC_010519:1764261:176722217672221767689468Haemophilus somnus 2336 chromosome, complete genomearginine repressor1e-0859.3
NC_008309:1155218:116245711624571162924468Haemophilus somnus 129PT, complete genomearginine repressor1e-0859.3
NC_002179:590000:608163608163608606444Chlamydophila pneumoniae AR39, complete genomearginine repressor3e-0858.2
NC_012880:3915500:393827139382713938741471Dickeya dadantii Ech703, complete genomearginine repressor, ArgR1e-0756.2
NC_013716:4824541:483855548385554839025471Citrobacter rodentium ICC168, complete genomearginine repressor8e-0753.1