Pre_GI: OUP Neighbours

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Query: NC_003277:22257 Salmonella typhimurium LT2 plasmid pSLT, complete sequence

D: 31.1132

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 44




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_014561:153143Pantoea vagans C9-1 plasmid pPag1, complete sequence78.0944 %Subject ←→ Query28.1767
NC_014562:1935088Pantoea vagans C9-1 chromosome, complete genome76.0723 %Subject ←→ Query30.3988
NC_015968:4389871Enterobacter asburiae LF7a chromosome, complete genome76.155 %Subject ←→ Query30.7332
NC_012962:3864000*Photorhabdus asymbiotica, complete genome76.0539 %Subject ←→ Query31.492
NC_008563:3119284Escherichia coli APEC O1, complete genome78.6642 %Subject ←→ Query31.9127
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome75.337 %Subject ←→ Query33.4286
NC_014562:1883517*Pantoea vagans C9-1 chromosome, complete genome75.0582 %Subject ←→ Query34.2182
NC_014304:77715Erwinia billingiae Eb661 plasmid pEB102, complete sequence77.886 %Subject ←→ Query34.3324
NC_013956:4579759Pantoea ananatis LMG 20103 chromosome, complete genome76.0202 %Subject ←→ Query34.8158
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome76.3909 %Subject ←→ Query35.1593
NC_014562:1402863Pantoea vagans C9-1 chromosome, complete genome76.8107 %Subject ←→ Query35.29
NC_010694:614985Erwinia tasmaniensis, complete genome77.981 %Subject ←→ Query35.5876
NC_014305:126029Erwinia billingiae Eb661 plasmid pEB170, complete sequence75.0184 %Subject ←→ Query35.5879
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete76.1673 %Subject ←→ Query35.8098
NC_009832:1946401Serratia proteamaculans 568, complete genome76.0539 %Subject ←→ Query35.908
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome76.9914 %Subject ←→ Query35.992
NC_007608:97092Shigella boydii Sb227 plasmid pSB4_227, complete sequence79.038 %Subject ←→ Query36.3239
NC_004431:1352906Escherichia coli CFT073, complete genome75.3738 %Subject ←→ Query36.4239
NC_009648:3720000*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome75.5668 %Subject ←→ Query36.7036
AP010958:1472506Escherichia coli O103:H2 str. 12009 DNA, complete genome78.2782 %Subject ←→ Query36.7127
NC_011751:1377457Escherichia coli UMN026 chromosome, complete genome77.2978 %Subject ←→ Query36.813
NC_012779:2064582Edwardsiella ictaluri 93-146, complete genome75.6127 %Subject ←→ Query37.0151
NC_008150:1420825*Yersinia pestis Antiqua, complete genome75.0674 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome75.1838 %Subject ←→ Query37.035
NC_002695:2893951Escherichia coli O157:H7 str. Sakai, complete genome75.1226 %Subject ←→ Query37.275
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome75.8609 %Subject ←→ Query37.4593
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome76.7402 %Subject ←→ Query37.8586
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome76.2439 %Subject ←→ Query37.9513
NC_005126:1265071Photorhabdus luminescens subsp. laumondii TTO1, complete genome78.1618 %Subject ←→ Query37.9976
NC_007385:157516Shigella sonnei Ss046 plasmid pSS_046, complete sequence77.8094 %Subject ←→ Query38.0958
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome76.152 %Subject ←→ Query38.2235
NC_002655:1909139Escherichia coli O157:H7 EDL933, complete genome75.0429 %Subject ←→ Query38.4667
NC_011750:919953Escherichia coli IAI39 chromosome, complete genome75.4228 %Subject ←→ Query38.6045
NC_011750:2009889Escherichia coli IAI39 chromosome, complete genome76.7371 %Subject ←→ Query39.0625
NC_012779:3176820*Edwardsiella ictaluri 93-146, complete genome75.8395 %Subject ←→ Query39.7546
NC_012779:305969Edwardsiella ictaluri 93-146, complete genome77.6348 %Subject ←→ Query39.836
NC_012779:2281700*Edwardsiella ictaluri 93-146, complete genome76.3021 %Subject ←→ Query40.1776
NC_014121:1822895Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete75.1869 %Subject ←→ Query40.59
NC_014228:3282500Xenorhabdus nematophila ATCC 19061, complete genome76.4583 %Subject Query41.4806
NC_012779:2928000*Edwardsiella ictaluri 93-146, complete genome75.6127 %Subject Query41.5453
NC_012779:1449500*Edwardsiella ictaluri 93-146, complete genome77.6348 %Subject Query41.6091
NC_013508:876431*Edwardsiella tarda EIB202, complete genome75.1716 %Subject Query41.7282
NC_010660:175200*Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence79.2862 %Subject Query46.3542
NC_009648:1487692Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.1612 %Subject Query49.6231