Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_004431: Escherichia coli CFT073, complete genome

NCBI: NC_004431

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (CFT073; O6:K2:H1) is uropathogenic E. coli (UPEC) one of the most common causes of non-hospital-acquired urinary tract infections. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1153907*17771123805Island text1.7096634.259529.4128Neighbours41BLASTN+ PAI DB153907.gbk
227986832229542428Island text3.338539.529218.2544Neighbours41BLASTN+IslandViewer PAI DB279868.gbk
332400034580421805Island text1.4692234.801224.908Neighbours41BLASTN+IslandViewer 324000.gbk
4364000*42492660927Island text1.7090334.658826.5865Neighbours41BLASTN+IslandViewer PAI DB364000.gbk
51119700115120831509Island text2.6842339.470922.0874Neighbours41BLASTN+IslandViewer 1119700.gbk
61166568119813631569Island text1.9134837.223223.3696Neighbours41BLASTN+IslandViewer PAI DB1166568.gbk
71211000*123322222223Island text2.1649137.089326.8394Neighbours41BLASTN+IslandViewer PAI DB1211000.gbk
81352906137651123606Island text1.4121536.423935.6316Neighbours51BLASTN+IslandViewer 1352906.gbk
91401681142114919469Island text1.6901231.495633.1024Neighbours41BLASTN+IslandViewer 1401681.gbk
101443968146977025803Island text2.3785135.638721.9079Neighbours41BLASTNIslandViewer PAI DB1443968.gbk
111713141173884125701Island text1.6064633.26546.0348Neighbours41BLASTNIslandViewer 1713141.gbk
121754627177809923473Island text2.1060731.742523.0981Neighbours41BLASTN+IslandViewer PAI DB1754627.gbk
132185750*224915063401Island text2.9882539.483221.9484Neighbours41BLASTN+IslandViewer 2185750.gbk
142304280233659932320Island text1.800133.13831.1029Neighbours41BLASTN+IslandViewer 2304280.gbk
152383901241472630826Island text4.0938742.986321.4983Neighbours41BLASTNIslandViewer 2383901.gbk
162444972246809923128Island text1.9126428.167624.3452Neighbours41BLASTN+IslandViewer 2444972.gbk
172747237277257425338Island text2.2116236.380618.6135Neighbours41BLASTNIslandViewer 2747237.gbk
183012668303118918522Island text1.7942231.468922.7738Neighbours41BLASTN+IslandViewer 3012668.gbk
193040953306393422982Island text1.7913135.958925.757Neighbours41BLASTN+IslandViewer 3040953.gbk
203409389*349493685548Island text1.8883137.476226.2474Neighbours41BLASTN+IslandViewer PAI DB3409389.gbk
213513147354268029534Island text4.6858444.325818.5961Neighbours41BLASTN+IslandViewer PAI DB3513147.gbk
223986472400948723016Island text2.2225235.164423.9864Neighbours41BLASTNIslandViewer PAI DB3986472.gbk
234223232*424609922868Island text2.4693135.220118.6649Neighbours41BLASTNIslandViewer 4223232.gbk
244270305*431798947685Island text1.8273235.498923.0447Neighbours41BLASTN+IslandViewer PAI DB4270305.gbk
254319152434223723086Island text1.52534.259532.5557Neighbours41BLASTN+IslandViewer 4319152.gbk
264867648489054022893Island text1.4945532.496424.6741Neighbours41BLASTN+4867648.gbk
274955658*497950623849Island text1.7435136.016128.8921Neighbours41BLASTN+IslandViewer PAI DB4955658.gbk
285123325514909025766Island text2.2319233.909523.2967Neighbours41BLASTN+IslandViewer PAI DB5123325.gbk