Pre_GI: BLASTN Hits

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Query: NC_004431:5123325 Escherichia coli CFT073, complete genome

Start: 5123325, End: 5149090, Length: 25766

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (CFT073; O6:K2:H1) is uropathogenic E. coli (UPEC) one of the most common causes of non-hospital-acquired urinary tract infections. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
CP002185:47918114791811481779025980Escherichia coli W, complete genome020280BLASTN svgBLASTP svg
CU928160:4570498*4570498461509944602Escherichia coli IAI1 chromosome, complete genome020250BLASTN svgBLASTP svg
NC_000913:45282784528278455238424107Escherichia coli K12, complete genome020160BLASTN svgBLASTP svg
AC_000091:45349354534935455904124107Escherichia coli W3110 DNA, complete genome020160BLASTN svgBLASTP svg
NC_011750:49780004978000500028022281Escherichia coli IAI39 chromosome, complete genome017410BLASTN svgBLASTP svg
NC_010498:49306494930649495591925271Escherichia coli SMS-3-5, complete genome014960BLASTN svgBLASTP svg
CP002516:41991334199133422817229040Escherichia coli KO11, complete genome014910BLASTN svgBLASTP svg
NC_008253:48178644817864486276044897Escherichia coli 536, complete genome013020BLASTN svgBLASTP svg
NC_007946:48759974875997491969643700Escherichia coli UTI89, complete genome012990BLASTN svgBLASTP svg
NC_002695:5381576*5381576540611824543Escherichia coli O157:H7 str. Sakai, complete genome012480BLASTN svgBLASTP svg
CP002797:46563274656327468071624390Escherichia coli NA114, complete genome012450BLASTN svgBLASTP svg
NC_011751:50705975070597508906918473Escherichia coli UMN026 chromosome, complete genome012270BLASTN svgBLASTP svg
NC_007613:44030704403070442929526226Shigella boydii Sb227, complete genome012080BLASTN svgBLASTP svg
NC_008563:49051864905186492360518420Escherichia coli APEC O1, complete genome011670BLASTN svgBLASTP svg
NC_008258:4345400*4345400436989824499Shigella flexneri 5 str. 8401, complete genome010770BLASTN svgBLASTP svg
NC_009800:4529504*4529504454809918596Escherichia coli HS, complete genome010570BLASTN svgBLASTP svg
NC_004741:4364235*4364235438964325409Shigella flexneri 2a str. 2457T, complete genome010310BLASTN svgBLASTP svg
NC_004337:4374500*4374500439909924600Shigella flexneri 2a str. 301, complete genome010310BLASTN svgBLASTP svg
NC_009801:48826844882684490824525562Escherichia coli E24377A, complete genome07749BLASTN svgBLASTP svg
NC_010473:46303614630361465014819788Escherichia coli str. K-12 substr. DH10B, complete genome07222BLASTN svgBLASTP svg
AP010958:52728635272863529459921737Escherichia coli O103:H2 str. 12009 DNA, complete genome05826BLASTN svgBLASTP svg
NC_008253:28285732828573285250723935Escherichia coli 536, complete genome02127BLASTN svgBLASTP svg
NC_004431:11665681166568119813631569Escherichia coli CFT073, complete genome02127BLASTN svgBLASTP svg
NC_008253:31613113161311320913747827Escherichia coli 536, complete genome01988BLASTN svgBLASTP svg
NC_010498:48991674899167492274523579Escherichia coli SMS-3-5, complete genome01386BLASTN svgBLASTP svg
NC_008786:38459883845988387218826201Verminephrobacter eiseniae EF01-2, complete genome0670BLASTN svgBLASTP svg
NC_002927:960369*96036999159931231Bordetella bronchiseptica RB50, complete genome3e-160573BLASTN svgBLASTP svg
NC_010102:997417*997417101802320607Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,3e-148533BLASTN svgBLASTP svg
NC_011149:1987291*1987291203423646946Salmonella enterica subsp. enterica serovar Agona str. SL483,4e-141509BLASTN svgBLASTP svg
NC_012912:3853377*3853377389607042694Dickeya zeae Ech1591, complete genome3e-117430BLASTN svgBLASTP svg
NC_002695:53525545352554537663924086Escherichia coli O157:H7 str. Sakai, complete genome3e-114420BLASTN svgBLASTP svg
NC_002655:53825575382557540664224086Escherichia coli O157:H7 EDL933, complete genome3e-114420BLASTN svgBLASTP svg
NC_010468:4252940*4252940428159928660Escherichia coli ATCC 8739, complete genome9e-96359BLASTN svgBLASTP svg
NC_015422:3184823*3184823320638321561Alicycliphilus denitrificans K601 chromosome, complete genome9e-56226BLASTN svgBLASTP svg
NC_008786:27296352729635277134341709Verminephrobacter eiseniae EF01-2, complete genome9e-53216BLASTN svgBLASTP svg
NC_010468:2406387*2406387242509318707Escherichia coli ATCC 8739, complete genome1e-42182BLASTN svgBLASTP svg
NC_009434:3434381*3434381346411529735Pseudomonas stutzeri A1501, complete genome3e-37165BLASTN svgBLASTP svg
NC_015635:3860570*3860570389185531286Microlunatus phosphovorus NM-1, complete genome7e-32147BLASTN svgBLASTP svg
NC_010170:44630004463000451176948770Bordetella petrii, complete genome4e-30141BLASTN svgBLASTP svg
NC_011149:11106421110642113231521674Salmonella enterica subsp. enterica serovar Agona str. SL483,4e-30141BLASTN svgBLASTP svg
NC_012880:10914861091486111695125466Dickeya dadantii Ech703, complete genome4e-30141BLASTN svgBLASTP svg
NC_010002:4572573*4572573461858346011Delftia acidovorans SPH-1, complete genome1e-27133BLASTN svgBLASTP svg
NC_007384:17633751763375178359920225Shigella sonnei Ss046, complete genome1e-27133BLASTN svgBLASTP svg
CP002185:79473279473281843123700Escherichia coli W, complete genome4e-27131BLASTN svgBLASTP svg
NC_008752:16687716687718811421238Acidovorax avenae subsp. citrulli AAC00-1, complete genome2e-25125BLASTN svgBLASTP svg
NC_013204:989103989103101209922997Eggerthella lenta DSM 2243, complete genome1e-24123BLASTN svgBLASTP svg
NC_011740:14947961494796152042525630Escherichia fergusonii ATCC 35469, complete genome4e-24121BLASTN svgBLASTP svg
NC_003143:14412111441211146223121021Yersinia pestis CO92, complete genome1e-23119BLASTN svgBLASTP svg
NC_004088:31869543186954320951322560Yersinia pestis KIM, complete genome1e-23119BLASTN svgBLASTP svg
NC_005810:14133051413305143757924275Yersinia pestis biovar Microtus str. 91001, complete genome1e-23119BLASTN svgBLASTP svg
NC_008149:30229703022970304559922630Yersinia pestis Nepal516, complete genome1e-23119BLASTN svgBLASTP svg
NC_010159:15580001558000157786119862Yersinia pestis Angola, complete genome1e-23119BLASTN svgBLASTP svg
NC_010465:30469043046904306991523012Yersinia pseudotuberculosis YPIII, complete genome1e-23119BLASTN svgBLASTP svg
NC_012912:1788308*1788308184662758320Dickeya zeae Ech1591, complete genome6e-23117BLASTN svgBLASTP svg
NC_006155:15673061567306159029622991Yersinia pseudotuberculosis IP 32953, complete genome2e-22115BLASTN svgBLASTP svg
NC_013124:1439915*1439915146670526791Acidimicrobium ferrooxidans DSM 10331, complete genome2e-22115BLASTN svgBLASTP svg
CU928160:25693225693227863921708Escherichia coli IAI1 chromosome, complete genome9e-22113BLASTN svgBLASTP svg
NC_010634:15657881565788158879323006Yersinia pseudotuberculosis PB1/+, complete genome4e-21111BLASTN svgBLASTP svg
NC_007946:25874725874728282624080Escherichia coli UTI89, complete genome6e-20107BLASTN svgBLASTP svg
NC_008253:25705925705928215125093Escherichia coli 536, complete genome6e-20107BLASTN svgBLASTP svg
NC_008563:258725*25872528280524081Escherichia coli APEC O1, complete genome6e-20107BLASTN svgBLASTP svg
NC_010170:44096834409683443529725615Bordetella petrii, complete genome6e-20107BLASTN svgBLASTP svg
NC_002695:26123526123528377222538Escherichia coli O157:H7 str. Sakai, complete genome2e-19105BLASTN svgBLASTP svg
NC_002655:26123626123628140820173Escherichia coli O157:H7 EDL933, complete genome2e-19105BLASTN svgBLASTP svg
NC_011751:25683025683028052023691Escherichia coli UMN026 chromosome, complete genome4e-18101BLASTN svgBLASTP svg
NC_008609:20631320631324672140409Pelobacter propionicus DSM 2379, complete genome4e-18101BLASTN svgBLASTP svg
NC_014121:35538093553809358001526207Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-1799.6BLASTN svgBLASTP svg
NC_004431:17131411713141173884125701Escherichia coli CFT073, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_007946:15866561586656161278726132Escherichia coli UTI89, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_008563:15778791577879160172323845Escherichia coli APEC O1, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_014933:81496481496483469719734Bacteroides helcogenes P 36-108 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010102:4745949*4745949476837922431Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,3e-1591.7BLASTN svgBLASTP svg
NC_014840:76232762329583419603Pantoea sp. At-9b plasmid pPAT9B03, complete sequence5e-1487.7BLASTN svgBLASTP svg
NC_002936:10045701004570102326218693Dehalococcoides ethenogenes 195, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_004431:364000*36400042492660927Escherichia coli CFT073, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_005126:34965834965840029550638Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_005126:43337674333767439509961333Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_005126:4824500*4824500485430329804Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_015740:15943761594376161634721972Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete8e-1383.8BLASTN svgBLASTP svg
NC_015633:28013212801321282546624146Vibrio anguillarum 775 chromosome chromosome I, complete sequence3e-1281.8BLASTN svgBLASTP svg
NC_010655:1808657*1808657182780319147Akkermansia muciniphila ATCC BAA-835, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_007384:27881027881029760818799Shigella sonnei Ss046, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010831:12240001224000125317729178Chlorobium phaeobacteroides BS1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_011751:17141311714131174129427164Escherichia coli UMN026 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_013850:28460692846069288409738029Klebsiella variicola At-22 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010473:16076461607646163120923564Escherichia coli str. K-12 substr. DH10B, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_000913:15170511517051154061423564Escherichia coli K12, complete genome5e-1177.8BLASTN svgBLASTP svg
AC_000091:15219761521976154430422329Escherichia coli W3110 DNA, complete genome5e-1177.8BLASTN svgBLASTP svg
AC_000091:39952333995233402122325991Escherichia coli W3110 DNA, complete genome2e-1075.8BLASTN svgBLASTP svg
AC_000091:4501430*4501430452291521486Escherichia coli W3110 DNA, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_000913:44947734494773451470019928Escherichia coli K12, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007946:289425*28942536040270978Escherichia coli UTI89, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008563:318993*31899336258343591Escherichia coli APEC O1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009801:21591232159123218213823016Escherichia coli E24377A, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010473:4596500*4596500461806621567Escherichia coli str. K-12 substr. DH10B, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011750:4947500*4947500496714419645Escherichia coli IAI39 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011751:49925004992500501338720888Escherichia coli UMN026 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002655:47479264747926477356525640Escherichia coli O157:H7 EDL933, complete genome8e-1073.8BLASTN svgBLASTP svg
CU928160:37090813709081373009921019Escherichia coli IAI1 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
CU928145:39834323983432403268849257Escherichia coli 55989 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
CP002516:24676724676726745320687Escherichia coli KO11, complete genome8e-1073.8BLASTN svgBLASTP svg
CP002185:38224703822470385930636837Escherichia coli W, complete genome8e-1073.8BLASTN svgBLASTP svg
AP010958:43134624313462433479021329Escherichia coli O103:H2 str. 12009 DNA, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_002695:46789454678945470459925655Escherichia coli O157:H7 str. Sakai, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_004337:36219853621985364626824284Shigella flexneri 2a str. 301, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_004741:41320564132056415578223727Shigella flexneri 2a str. 2457T, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_007606:37551553755155377834323189Shigella dysenteriae Sd197, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_007613:34703143470314350909338780Shigella boydii Sb227, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_008258:35815833581583360816926587Shigella flexneri 5 str. 8401, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_009801:39569173956917397533818422Escherichia coli E24377A, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_011748:39834323983432403268849257Escherichia coli 55989, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015566:1206500*1206500124185935360Serratia sp. AS12 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015567:1206727*1206727124209935373Serratia sp. AS9 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
AC_000091:43131674313167433668223516Escherichia coli W3110 DNA, complete genome1e-0869.9BLASTN svgBLASTP svg
AP010958:50221965022196504082118626Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-0869.9BLASTN svgBLASTP svg
CP002185:45661504566150459009923950Escherichia coli W, complete genome1e-0869.9BLASTN svgBLASTP svg
CP002516:44312354431235445210920875Escherichia coli KO11, complete genome1e-0869.9BLASTN svgBLASTP svg
CU928145:46959324695932471752121590Escherichia coli 55989 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
CU928160:43951564395156441536720212Escherichia coli IAI1 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_000913:43074714307471432826120791Escherichia coli K12, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007384:45300004530000455031620317Shigella sonnei Ss046, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007613:41568414156841418149124651Shigella boydii Sb227, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009800:43322294332229435609923871Escherichia coli HS, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014915:1331459*1331459135560624148Geobacillus sp. Y412MC52 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013411:2191514*2191514221566224149Geobacillus sp. Y412MC61, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011750:47194774719477473972720251Escherichia coli IAI39 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011748:46959324695932471752121590Escherichia coli 55989, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010473:44094924409492443038920898Escherichia coli str. K-12 substr. DH10B, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010468:43051054305105432709121987Escherichia coli ATCC 8739, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009801:46430004643000466340420405Escherichia coli E24377A, complete genome1e-0869.9BLASTN svgBLASTP svg
AC_000091:39768883976888399503018143Escherichia coli W3110 DNA, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_000913:3624826*3624826366560340778Escherichia coli K12, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008253:29650029650032229825799Escherichia coli 536, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009800:3685651*3685651370909923449Escherichia coli HS, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010468:23100023100025334622347Escherichia coli ATCC 8739, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010468:32093263209326323524825923Escherichia coli ATCC 8739, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010473:37225713722571375929536725Escherichia coli str. K-12 substr. DH10B, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_004603:37032037032039589225573Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete2e-0765.9BLASTN svgBLASTP svg
NC_007384:2933625*2933625295770924085Shigella sonnei Ss046, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009783:16370001637000165503318034Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_009784:21290692129069215319824130Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_010498:4821519*4821519484497023452Escherichia coli SMS-3-5, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005126:5188976*5188976521454825573Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-0763.9BLASTN svgBLASTP svg
CU928160:2818750*2818750284490226153Escherichia coli IAI1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_000913:20925592092559212109928541Escherichia coli K12, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004431:23839012383901241472630826Escherichia coli CFT073, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007613:86408486408489531131228Shigella boydii Sb227, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007946:22318722231872226061428743Escherichia coli UTI89, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008253:21341102134110216406229953Escherichia coli 536, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009784:12317911231791125420022410Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_010473:21835672183567221209928533Escherichia coli str. K-12 substr. DH10B, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010658:10901041090104112159931496Shigella boydii CDC 3083-94, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014500:20191132019113204779528683Dickeya dadantii 3937 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020063:33525163352516337629223777Enterobacteriaceae bacterium strain FGI 57, complete genome3e-0661.9BLASTN svgBLASTP svg
AC_000091:20966722096672212665729986Escherichia coli W3110 DNA, complete genome3e-0661.9BLASTN svgBLASTP svg