Pre_GI: BLASTN Hits

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Query: NC_004431:1119700 Escherichia coli CFT073, complete genome

Start: 1119700, End: 1151208, Length: 31509

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (CFT073; O6:K2:H1) is uropathogenic E. coli (UPEC) one of the most common causes of non-hospital-acquired urinary tract infections. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007946:10731351073135109859925465Escherichia coli UTI89, complete genome044260BLASTN svgBLASTP svg
NC_010468:2809125*2809125282748818364Escherichia coli ATCC 8739, complete genome013830BLASTN svgBLASTP svg
AC_000091:1083798*1083798110686123064Escherichia coli W3110 DNA, complete genome013820BLASTN svgBLASTP svg
NC_002695:13294721329472135374624275Escherichia coli O157:H7 str. Sakai, complete genome013780BLASTN svgBLASTP svg
NC_002655:14132441413244143751824275Escherichia coli O157:H7 EDL933, complete genome013770BLASTN svgBLASTP svg
NC_002655:10530821053082107777224691Escherichia coli O157:H7 EDL933, complete genome011480BLASTN svgBLASTP svg
NC_002655:14486051448605147337924775Escherichia coli O157:H7 EDL933, complete genome011480BLASTN svgBLASTP svg
NC_002695:13648331364833138927424442Escherichia coli O157:H7 str. Sakai, complete genome011480BLASTN svgBLASTP svg
NC_000913:1087062*1087062110699919938Escherichia coli K12, complete genome011300BLASTN svgBLASTP svg
NC_008258:1076922*1076922110024923328Shigella flexneri 5 str. 8401, complete genome08932BLASTN svgBLASTP svg
AP010958:3853082*3853082389809945018Escherichia coli O103:H2 str. 12009 DNA, complete genome03366BLASTN svgBLASTP svg
NC_004337:32497913249791327283723047Shigella flexneri 2a str. 301, complete genome01550BLASTN svgBLASTP svg
NC_004741:3240909*3240909326236621458Shigella flexneri 2a str. 2457T, complete genome01550BLASTN svgBLASTP svg
NC_010473:3354052*3354052337759923548Escherichia coli str. K-12 substr. DH10B, complete genome01338BLASTN svgBLASTP svg
NC_000913:3256307*3256307327821621910Escherichia coli K12, complete genome01338BLASTN svgBLASTP svg
AC_000091:3258377*3258377328148023104Escherichia coli W3110 DNA, complete genome01338BLASTN svgBLASTP svg
CP002185:3475991*3475991350005224062Escherichia coli W, complete genome01314BLASTN svgBLASTP svg
NC_011751:37107863710786373513424349Escherichia coli UMN026 chromosome, complete genome01298BLASTN svgBLASTP svg
NC_011750:3768692*3768692379303824347Escherichia coli IAI39 chromosome, complete genome01227BLASTN svgBLASTP svg
NC_010498:22783062278306230147623171Escherichia coli SMS-3-5, complete genome01191BLASTN svgBLASTP svg
CU928145:3608917*3608917363276823852Escherichia coli 55989 chromosome, complete genome01053BLASTN svgBLASTP svg
CU928160:3344746*3344746336309918354Escherichia coli IAI1 chromosome, complete genome01053BLASTN svgBLASTP svg
NC_009801:35950013595001361359918599Escherichia coli E24377A, complete genome01053BLASTN svgBLASTP svg
NC_011748:3608917*3608917363276823852Escherichia coli 55989, complete genome01053BLASTN svgBLASTP svg
NC_013508:876431*87643191551339083Edwardsiella tarda EIB202, complete genome01029BLASTN svgBLASTP svg
NC_010468:61381261381263388120070Escherichia coli ATCC 8739, complete genome01023BLASTN svgBLASTP svg
NC_002695:3994970*3994970401809923130Escherichia coli O157:H7 str. Sakai, complete genome0981BLASTN svgBLASTP svg
NC_010498:34885133488513350850119989Escherichia coli SMS-3-5, complete genome0969BLASTN svgBLASTP svg
NC_009800:3307123*3307123332547318351Escherichia coli HS, complete genome0967BLASTN svgBLASTP svg
NC_004431:11665681166568119813631569Escherichia coli CFT073, complete genome0660BLASTN svgBLASTP svg
NC_008253:29650029650032229825799Escherichia coli 536, complete genome5e-172613BLASTN svgBLASTP svg
NC_010498:48560114856011487626620256Escherichia coli SMS-3-5, complete genome8e-143515BLASTN svgBLASTP svg
CU928145:4950723*4950723498014229420Escherichia coli 55989 chromosome, complete genome3e-139504BLASTN svgBLASTP svg
NC_011748:4950723*4950723498014229420Escherichia coli 55989, complete genome3e-139504BLASTN svgBLASTP svg
NC_011083:45478254547825460814560321Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-132482BLASTN svgBLASTP svg
NC_013716:1178383*1178383120516726785Citrobacter rodentium ICC168, complete genome1e-126462BLASTN svgBLASTP svg
NC_002695:14179121417912143730119390Escherichia coli O157:H7 str. Sakai, complete genome1e-113418BLASTN svgBLASTP svg
NC_002655:11039911103991112782323833Escherichia coli O157:H7 EDL933, complete genome1e-113418BLASTN svgBLASTP svg
NC_004431:27986827986832229542428Escherichia coli CFT073, complete genome3e-96361BLASTN svgBLASTP svg
NC_020064:2697116*2697116272016423049Serratia marcescens FGI94, complete genome1e-83319BLASTN svgBLASTP svg
CP002797:4812799*4812799483159918801Escherichia coli NA114, complete genome6e-39170BLASTN svgBLASTP svg
NC_009786:43331433316409920769Escherichia coli E24377A plasmid pETEC_80, complete sequence2e-38168BLASTN svgBLASTP svg
NC_010658:1933605*1933605196015326549Shigella boydii CDC 3083-94, complete genome8e-35157BLASTN svgBLASTP svg
NC_010658:36226103622610364133018721Shigella boydii CDC 3083-94, complete genome8e-35157BLASTN svgBLASTP svg
NC_010660:33109331095109917991Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence8e-35157BLASTN svgBLASTP svg
AP010958:36273553627355365976432410Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-33153BLASTN svgBLASTP svg
AP010958:5090696*5090696512565934964Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-33153BLASTN svgBLASTP svg
NC_002655:39195453919545394618926645Escherichia coli O157:H7 EDL933, complete genome1e-33153BLASTN svgBLASTP svg
NC_002695:38522333852233387887626644Escherichia coli O157:H7 str. Sakai, complete genome1e-33153BLASTN svgBLASTP svg
NC_004431:3409389*3409389349493685548Escherichia coli CFT073, complete genome1e-33153BLASTN svgBLASTP svg
NC_007946:47797454779745482809648352Escherichia coli UTI89, complete genome1e-33153BLASTN svgBLASTP svg
NC_008253:3122148*3122148315923237085Escherichia coli 536, complete genome2e-32149BLASTN svgBLASTP svg
NC_011751:34536833453683351238358701Escherichia coli UMN026 chromosome, complete genome3e-31145BLASTN svgBLASTP svg
CU928159:30700*307004909918400Escherichia coli str. 55989 plasmid 55989p, complete genome8e-29137BLASTN svgBLASTP svg
CP002797:4603787*4603787464340739621Escherichia coli NA114, complete genome2e-26129BLASTN svgBLASTP svg
NC_008253:3941938*3941938399883856901Escherichia coli 536, complete genome2e-26129BLASTN svgBLASTP svg
NC_008563:47078264707826473072322898Escherichia coli APEC O1, complete genome1e-21113BLASTN svgBLASTP svg
NC_004431:43191524319152434223723086Escherichia coli CFT073, complete genome1e-21113BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_013421:70100570100575174450740Pectobacterium wasabiae WPP163, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_013421:478586*47858650902930444Pectobacterium wasabiae WPP163, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_007606:12091321209132122967220541Shigella dysenteriae Sd197, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_007606:15154031515403153810522703Shigella dysenteriae Sd197, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_007606:19998701999870202709927230Shigella dysenteriae Sd197, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_007606:23530982353098237552222425Shigella dysenteriae Sd197, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_007606:37551553755155377834323189Shigella dysenteriae Sd197, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_007606:4182188*4182188420162219435Shigella dysenteriae Sd197, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_004337:1065609*1065609109071125103Shigella flexneri 2a str. 301, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_007607:870008700012362836629Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence2e-1179.8BLASTN svgBLASTP svg
NC_015856:26803426803429827830245Collimonas fungivorans Ter331 chromosome, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_012779:1449500*1449500150683157332Edwardsiella ictaluri 93-146, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_006511:1770000*1770000179181621817Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC4e-0971.9BLASTN svgBLASTP svg
NC_015061:42860004286000431231226313Rahnella sp. Y9602 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015572:45767784576778460783531058Methylomonas methanica MC09 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_014121:2629075*2629075265233623262Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-0765.9BLASTN svgBLASTP svg
NC_012779:36527373652737367609923363Edwardsiella ictaluri 93-146, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011149:1987291*1987291203423646946Salmonella enterica subsp. enterica serovar Agona str. SL483,9e-0763.9BLASTN svgBLASTP svg
NC_011083:12165001216500123593619437Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,9e-0763.9BLASTN svgBLASTP svg
NC_011080:12099351209935123471124777Salmonella enterica subsp. enterica serovar Newport str. SL254,9e-0763.9BLASTN svgBLASTP svg
NC_010067:1782998*1782998180098317986Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete9e-0763.9BLASTN svgBLASTP svg
NC_004631:1842050*1842050186312621077Salmonella enterica subsp. enterica serovar Typhi Ty2, complete9e-0763.9BLASTN svgBLASTP svg
NC_003198:1117687*1117687114274925063Salmonella enterica subsp. enterica serovar Typhi str. CT18,9e-0763.9BLASTN svgBLASTP svg