Pre_GI: BLASTP Hits

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Query: NC_017328:3935185:3955764 Shigella flexneri 2002017 chromosome, complete genome

Start: 3955764, End: 3957872, Length: 2109

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:4095016:4101517410151741036252109Shigella sonnei Ss046, complete genomeputative transposase01451
NC_006512:2789098:2812068281206828141462079Idiomarina loihiensis L2TR, complete genomeTransposon Tn7 transposition protein tnsB0672
NC_014844:2721746:2729872272987227319592088Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeintegrase catalytic subunit0672
NC_015851:89006:1057801057801078552076Acidithiobacillus caldus SM-1 megaplasmid, complete sequencetransposon Tn7 transposition protein tnsB0643
NC_015572:4916430:4936848493684849389292082Methylomonas methanica MC09 chromosome, complete genomeintegrase catalytic subunit2e-169596
NC_009052:5089963:5100587510058751026592073Shewanella baltica OS155, complete genomeIntegrase, catalytic region6e-168591
NC_015740:4508375:4518273451827345203332061Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeintegrase core domain-containing protein1e-166587
NC_010995:4525119:4548733454873345508442112Cellvibrio japonicus Ueda107, complete genomeTn7-Cj, transposase protein TnsB7e-137488
NC_014394:1325616:1328977132897713311422166Gallionella capsiferriformans ES-2 chromosome, complete genomeIntegrase catalytic region2e-116420
NC_014657:2127500:2136058213605821382202163Caldicellulosiruptor owensensis OL chromosome, complete genomeintegrase catalytic region2e-105384
NC_011206:200000:2065542065542087402187Acidithiobacillus ferrooxidans ATCC 53993, complete genomeTn7-like transposition protein B6e-103375
NC_013921:1915377:1924090192409019262522163Thermoanaerobacter italicus Ab9 chromosome, complete genomeIntegrase catalytic region1e-102374
NC_015958:2174731:2184442218444221866042163Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeintegrase catalytic subunit6e-101369
NC_015497:4564339:4570940457094045731082169Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genometransposon Tn7 transposition protein TnsB3e-94346
NC_010718:237962:2568042568042589572154Natranaerobius thermophilus JW/NM-WN-LF, complete genomeIntegrase catalytic region3e-90333
NC_015733:5955467:5969934596993459721022169Pseudomonas putida S16 chromosome, complete genomeTn7-like transposition protein B5e-76286
NC_010501:5735656:5750541575054157527122172Pseudomonas putida W619, complete genomeTn7-like transposition protein B2e-69264
NC_010625:1602191:1614741161474116169272187Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencehypothetical protein7e-69262
NC_007492:6372900:6414895641489564170662172Pseudomonas fluorescens PfO-1, complete genomeTn7-like transposition protein B8e-62238
NC_007974:2048000:2057521205752120596982178Ralstonia metallidurans CH34 chromosome 2, complete sequencehypothetical protein7e-60232
NC_010634:4463727:4485390448539044875552166Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein3e-59230
NC_014118:987889:1028596102859610310222427Burkholderia sp. CCGE1002 chromosome chromosome 2, completehypothetical protein4e-46186
NC_009838:81913:1099931099931121162124Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceTnsB3e-45183
CU928145:3983432:3998093399809340002162124Escherichia coli 55989 chromosome, complete genomeTn7-like transposition protein TnsB3e-45183
NC_011748:3983432:3998093399809340002162124Escherichia coli 55989, complete genomeTn7-like transposition protein TnsB3e-45183
NC_014121:5000069:5014584501458450166622079Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeTn7-like transposition protein TnsB6e-45182
NC_009349:3396:1164611646138292184Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completeTn7-like transposition protein B8e-44179
NC_009659:3815966:3836600383660038388252226Janthinobacterium sp. Marseille chromosome, complete genomeTn7-like transposition protein B1e-40168
NC_010623:2057467:2057467205746720598872421Burkholderia phymatum STM815 chromosome 2, complete sequencehypothetical protein4e-36153
NC_014394:3114648:3124852312485231270952244Gallionella capsiferriformans ES-2 chromosome, complete genomeTn7-like transposition protein B1e-35152
NC_005773:5149768:5173332517333251754492118Pseudomonas syringae pv. phaseolicola 1448A, complete genometransposon Tn7-like transposase protein B2e-33144
NC_007908:1252189:1260390126039012626362247Rhodoferax ferrireducens T118, complete genomehypothetical protein2e-26121
NC_020409:1589044:159278015927801593301522Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTransposon Tn7 transposition protein TnsB (fragment)4e-26120
NC_007575:1663088:1667067166706716689231857Sulfurimonas denitrificans DSM 1251, complete genomeintegrase catalytic subunit2e-22107
NC_014366:3555425:3567950356795035698481899Gamma proteobacterium HdN1, complete genomeIntegrase, catalytic region7e-21102
NC_015572:1:1358813588155761989Methylomonas methanica MC09 chromosome, complete genomeintegrase catalytic subunit5e-1997.1
NC_002678:5060670:5088718508871850903251608Mesorhizobium loti MAFF303099, complete genometransposase7e-1996.3
NC_015161:1748236:1755388175538817573311944Deinococcus proteolyticus MRP chromosome, complete genomehypothetical protein1e-1895.5
NC_013166:32474:3602436024378921869Kangiella koreensis DSM 16069, complete genomeTransposase-like Mu2e-1894.4
NC_007498:134442:1538771538771557541878Pelobacter carbinolicus DSM 2380, complete genomehypothetical protein8e-1892.8
NC_009348:1064664:1073012107301210748921881Aeromonas salmonicida subsp. salmonicida A449, complete genomeTniA transposase1e-1792.4
NC_016616:915755:9399229399229418231902Dechlorosoma suillum PS chromosome, complete genomeintegrase family protein1e-1792
NC_014539:1:1839118391203521962Burkholderia sp. CCGE1003 chromosome 1, complete sequenceintegrase catalytic subunit4e-1687
NC_015572:1:4276342763446431881Methylomonas methanica MC09 chromosome, complete genomeintegrase catalytic subunit1e-1585.9
NC_012856:2633890:2649928264992826518261899Ralstonia pickettii 12D chromosome 1, complete genomeTniA transposase3e-1584.3
NC_008577:4611431:4638394463839446402471854Shewanella sp. ANA-3 chromosome 1, complete sequenceIntegrase, catalytic region1e-1482.4
NC_010120:1065833:1074745107474510762891545Neisseria meningitidis 053442, complete genomeconserved hypothetical protein1e-1482.4
NC_011761:2217632:2229241222924122311211881Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completetransposon transposition protein B2e-1481.6
NC_014752:1063506:1072340107234010735271188Neisseria lactamica ST-640, complete genomeintegrase3e-1480.9
NC_012440:1215838:1236077123607712379361860Persephonella marina EX-H1, complete genomeTniA transposase4e-1480.5
NC_009254:637952:6919556919556935831629Burkholderia vietnamiensis G4 chromosome 3, complete sequenceintegrase catalytic subunit4e-1480.5
NC_010939:405477:4235454235454254731929Actinobacillus pleuropneumoniae serovar 7 str. AP76, completePutative transposase6e-1480.1
NC_017387:247462:2474622474622493721911Acinetobacter baumannii TCDC-AB0715 chromosome, complete genometransposition protein B5e-1480.1
NC_010410:3606826:3693499369349936954091911Acinetobacter baumannii AYE, complete genomeputative transposase7e-1479.7
NC_014924:1701952:1709896170989617112961401Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeIntegrase catalytic region7e-1479.7
NC_017162:270460:2739922739922759021911Acinetobacter baumannii 1656-2 chromosome, complete genometransposase8e-1479.7
NC_016616:1091606:1121239112123911236112373Dechlorosoma suillum PS chromosome, complete genomehypothetical protein1e-1379
NC_010682:1652636:1669589166958916715111923Ralstonia pickettii 12J chromosome 1, complete sequencehypothetical protein1e-1379
NC_017986:1885613:1888422188842218901011680Pseudomonas putida ND6 chromosome, complete genomeTniA2e-1378.2
NC_012856:207194:2113422113422132341893Ralstonia pickettii 12D chromosome 1, complete genomeIntegrase catalytic region5e-1377
NC_017986:5833819:5844511584451158462291719Pseudomonas putida ND6 chromosome, complete genomeintegrase catalytic subunit3e-1273.9
NC_010682:3033646:3051516305151630534381923Ralstonia pickettii 12J chromosome 1, complete sequenceTniA transposase4e-1273.9
NC_010682:1763769:1768716176871617706381923Ralstonia pickettii 12J chromosome 1, complete sequenceTniA transposase4e-1273.9
NC_016616:2644883:2650240265024026519221683Dechlorosoma suillum PS chromosome, complete genomeMu transposase/integrase9e-1272.8
NC_007520:407627:4259384259384278481911Thiomicrospira crunogena XCL-2, complete genomeIntegrase, catalytic region1e-1172.4
NC_014215:2259290:2281505228150522832051701Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,TniA protein3e-1171.2
NC_007413:1405817:1407584140758414092661683Anabaena variabilis ATCC 29413, complete genomeIntegrase, catalytic region3e-1170.9
NC_008782:1277117:1296668129666812983381671Acidovorax sp. JS42, complete genomeIntegrase, catalytic region8e-1169.7
NC_016860:4055117:4082776408277640844551680Salmonella enterica subsp. enterica serovar Typhimurium strputative transposase TniA9e-1169.3
NC_009349:78000:8685886858885731716Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completeTniA protein1e-1069.3
NC_010501:1:80668066100241959Pseudomonas putida W619, complete genomeIntegrase catalytic region1e-1068.9
NC_009512:1:80468046100041959Pseudomonas putida F1, complete genomeIntegrase, catalytic region1e-1068.9
NC_010322:1:88288828107861959Pseudomonas putida GB-1 chromosome, complete genomeintegrase catalytic subunit1e-1068.9
NC_002947:8394:1713317133191662034Pseudomonas putida KT2440, complete genometransposase, putative1e-1068.9
NC_019973:6102442:6121481612148161237392259Mesorhizobium australicum WSM2073, complete genomeintegrase family protein1e-1068.9
NC_007509:3668:2569725697276461950Burkholderia sp. 383 chromosome 3, complete sequencehypothetical protein3e-1067.4
NC_003384:157158:1693331693331706191287Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid4e-1067.4
NC_013365:92973:1039281039281051961269Escherichia coli O111:H- str. 11128 plasmid pO111_1, completeTniA protein5e-1067
NC_009659:3384997:3399629339962934014611833Janthinobacterium sp. Marseille chromosome, complete genometransposase4e-1067
NC_010002:1879220:1892059189205918940111953Delftia acidovorans SPH-1, complete genomehypothetical protein7e-1066.2
NC_020409:2222000:2225628222562822275471920Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeIntegrase catalytic region8e-1066.2
NC_007517:3430237:3435106343510634370161911Geobacter metallireducens GS-15, complete genometransposase1e-0965.9
NC_008061:2153495:2168333216833321701321800Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceIntegrase, catalytic region1e-0965.9
NC_008543:90312:99641996411014401800Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceIntegrase, catalytic region1e-0965.9
NC_009997:2635025:2654472265447226564061935Shewanella baltica OS195, complete genomeIntegrase catalytic region1e-0965.5
NC_016901:2594942:2614389261438926163231935Shewanella baltica OS678 chromosome, complete genomeintegrase catalytic subunit1e-0965.5
NC_013893:1723939:1725148172514817265901443Staphylococcus lugdunensis HKU09-01 chromosome, complete genomeTn552 transposase2e-0965.1
NC_009349:78000:817558175510125019496Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete4e-0963.9
NC_007626:4135961:4135961413596141379221962Magnetospirillum magneticum AMB-1, complete genometransposase9e-0962.8
NC_012968:63898:7520175201771921992Methylotenera mobilis JLW8, complete genomeIntegrase catalytic region9e-0962.8
NC_015942:2544407:2566316256631625683522037Acidithiobacillus ferrivorans SS3 chromosome, complete genomeintegrase catalytic subunit3e-0860.8
NC_009656:3127240:3138806313880631406501845Pseudomonas aeruginosa PA7 chromosome, complete genomeintegrase catalytic subunit4e-0860.5
NC_009778:4188000:419723641972364198216981Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein5e-0860.1
NC_015671:3093596:3101288310128831027181431Cellvibrio gilvus ATCC 13127 chromosome, complete genometransposase-like Mu5e-0860.1
NC_011777:161505:1772771772771787221446Bacillus cereus AH820 plasmid pAH820_272, complete sequenceputative transposase6e-0860.1
NC_013235:3913000:3930560393056039322241665Nakamurella multipartita DSM 44233, complete genomeIntegrase catalytic region7e-0859.7
NC_012988:2507142:2508022250802225096801659Methylobacterium extorquens DM4, complete genometransposase of ISMdi29, ISNCY family8e-0859.7
NC_019673:6394319:6402870640287064042431374Saccharothrix espanaensis DSM 44229 complete genomeputative integrase4e-0757.4
NC_002947:6152500:6163260616326061652722013Pseudomonas putida KT2440, complete genometransposase, TnsB-related protein5e-0757
NC_015671:255808:2646962646962661051410Cellvibrio gilvus ATCC 13127 chromosome, complete genometransposase-like Mu6e-0756.6
NC_011884:2397248:2404335240433524070882754Cyanothece sp. PCC 7425, complete genomeIntegrase catalytic region2e-0654.7
NC_009956:88354:9555895558970511494Dinoroseobacter shibae DFL 12 plasmid pDSHI02, complete sequenceintegrase catalytic region2e-0654.7
NC_012855:39751:6146561465634772013Ralstonia pickettii 12D plasmid pRp12D01, complete sequenceIntegrase catalytic region3e-0654.3
NC_014307:2760347:2768927276892727708971971Ralstonia solanacearum CFBP2957 chromosome, complete genomehypothetical protein6e-0653.1