Pre_GI Gene

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Host: NC_006512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_006512:2789098 Idiomarina loihiensis L2TR, complete genome

Host Lineage: Idiomarina loihiensis; Idiomarina; Idiomarinaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This is the type strain for this organism, which was isolated from a hydrothermal vent at a depth of 1300 m from the Lo'ihi Seamount southeast of Hawaii. This organism grows optimally in salt concentrations of 7.5 to 10%. Genome comparison has suggested that the bacterium has maintained its amino acid transport and degradation systems but lost sugar transport and certain sugar metabolic genes suggesting that it lives on amino acids rather than sugars. This may be in keeping with the environment this organism grows in, which is at hydrothermal deep sea vents that are characterized by collections of proteinaceous particles. This organism may colonize these particles by producing exopolysaccharides.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
278909827914432346Outer membrane proteinQuickGO ontologyBLASTP
279150627935452040Phospholipase CQuickGO ontologyBLASTP
27935722794240669Probable phosphoserine phosphatase HAD-superfamily hydrolaseQuickGO ontologyBLASTP
27942972795199903Predicted polysaccharide hydrolase related to endo alpha-14 polygalactosaminidaseQuickGO ontologyBLASTP
27954002795951552Predicted secreted proteinQuickGO ontology
27960632796533471hypothetical protein
27966762796954279Possible Zn-finger proteinQuickGO ontology
27970812797425345hypothetical protein
27981352798941807Secreted metallopeptidase family M23M37QuickGO ontologyBLASTP
279896728000611095Predicted secreted proteinQuickGO ontology
28013042801600297hypothetical protein
28016422802370729hypothetical protein
280237928035451167hypothetical protein
280355228057892238Predicted signaling protein with an ATPase domainQuickGO ontologyBLASTP
280579028071271338Site-specific DNA-methyltransferaseQuickGO ontologyBLASTP
280729028086001311Transposon Tn7 transposition transposition regulatory protein tnsEQuickGO ontologyBLASTP
280889228104001509Transposon Tn7 transposition protein tnsDQuickGO ontologyBLASTP
281040128120681668Transposon Tn7 transposition protein tnsCQuickGO ontologyBLASTP
281206828141462079Transposon Tn7 transposition protein tnsBQuickGO ontologyBLASTP
28141302814957828Transposon Tn7 transposition protein tnsAQuickGO ontologyBLASTP
28152922815819528hypothetical protein
28158762816298423Transcriptional regulator CroCIxre familyQuickGO ontology
281669528185271833Glucosamine-fructose-6-phosphate aminotransferaseQuickGO ontologyBLASTP
281853128199011371N-acetylglucosamine-1-phosphate uridyltransferaseQuickGO ontologyBLASTP