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Query: NC_017154:2999841 Yersinia pestis D106004 chromosome, complete genome

Start: 2999841, End: 3019806, Length: 19966

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008150:26813272681327270532824002Yersinia pestis Antiqua, complete genome037250BLASTN svgBLASTP svg
NC_008149:13171091317109134111024002Yersinia pestis Nepal516, complete genome037250BLASTN svgBLASTP svg
NC_003143:29922952992295301138119087Yersinia pestis CO92, complete genome037250BLASTN svgBLASTP svg
NC_005810:27398782739878276387423997Yersinia pestis biovar Microtus str. 91001, complete genome037190BLASTN svgBLASTP svg
NC_004088:13872761387276140629619021Yersinia pestis KIM, complete genome037120BLASTN svgBLASTP svg
NC_010159:37791293779129380108621958Yersinia pestis Angola, complete genome033060BLASTN svgBLASTP svg
NC_010465:12730001273000129080517806Yersinia pseudotuberculosis YPIII, complete genome032470BLASTN svgBLASTP svg
NC_010634:33680003368000339029322294Yersinia pseudotuberculosis PB1/+, complete genome026290BLASTN svgBLASTP svg
NC_006155:34564883456488347575719270Yersinia pseudotuberculosis IP 32953, complete genome026250BLASTN svgBLASTP svg
NC_015224:35875003587500361767930180Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,01039BLASTN svgBLASTP svg
NC_012779:19662051966205198609919895Edwardsiella ictaluri 93-146, complete genome4e-54220BLASTN svgBLASTP svg
NC_012962:34636443463644349841134768Photorhabdus asymbiotica, complete genome5e-26127BLASTN svgBLASTP svg
NC_012559:978419*978419100401325595Laribacter hongkongensis HLHK9, complete genome1e-20109BLASTN svgBLASTP svg
NC_010067:17105317105319109420042Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-1385.7BLASTN svgBLASTP svg
NC_013592:20591382059138209167632539Dickeya dadantii Ech586, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015224:3225000*3225000325159926600Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-1075.8BLASTN svgBLASTP svg
NC_007510:91341191341193515721747Burkholderia sp. 383 chromosome 1, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_003197:2894344*2894344294288048537Salmonella typhimurium LT2, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_003198:27694492769449279300723559Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-0763.9BLASTN svgBLASTP svg
NC_004631:27553062755306277886423559Salmonella enterica subsp. enterica serovar Typhi Ty2, complete6e-0763.9BLASTN svgBLASTP svg
NC_006905:28576992857699289909341395Salmonella enterica subsp. enterica serovar Choleraesuis str6e-0763.9BLASTN svgBLASTP svg
NC_010102:28817142881714290709925386Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,6e-0763.9BLASTN svgBLASTP svg
NC_011080:28979772897977291952121545Salmonella enterica subsp. enterica serovar Newport str. SL254,6e-0763.9BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,6e-0763.9BLASTN svgBLASTP svg
NC_011149:28298112829811285287123061Salmonella enterica subsp. enterica serovar Agona str. SL483,6e-0763.9BLASTN svgBLASTP svg
NC_015224:2095816*2095816211873722922Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,9e-0660BLASTN svgBLASTP svg