Pre_GI: BLASTP Hits

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Query: NC_016822:3282654:3300925 Shigella sonnei 53G, complete genome

Start: 3300925, End: 3302370, Length: 1446

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:3151344:3167033316703331685201488Shigella sonnei Ss046, complete genomehypothetical protein0991
NC_011750:3407500:3424429342442934260811653Escherichia coli IAI39 chromosome, complete genomehypothetical protein0862
CP002185:3167738:3194189319418931958111623Escherichia coli W, complete genomeconserved hypothetical protein0861
NC_013361:3867558:3892628389262838942381611Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein0861
CP002516:903241:9102779102779118871611Escherichia coli KO11, complete genomehypothetical protein0861
NC_016902:903241:9102779102779118871611Escherichia coli KO11FL chromosome, complete genomehypothetical protein0861
AP010958:3474077:3499147349914735007571611Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein0861
NC_013353:3474077:3499147349914735007571611Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein0861
NC_011415:3217796:3242866324286632445181653Escherichia coli SE11 chromosome, complete genomehypothetical protein0861
CU928160:3030324:3055396305539630570481653Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein0861
NC_011741:3030324:3055396305539630570481653Escherichia coli IAI1 chromosome, complete genomehypothetical protein0861
NC_011748:3196173:3221281322128132229331653Escherichia coli 55989, complete genomehypothetical protein0860
CU928145:3196173:3221281322128132229331653Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein0860
NC_011751:3285646:3319702331970233213541653Escherichia coli UMN026 chromosome, complete genomehypothetical protein0858
NC_010468:906957:9139859139859156071623Escherichia coli ATCC 8739, complete genomehypothetical protein0848
NC_009801:3175714:3200782320078232024341653Escherichia coli E24377A, complete genomehypothetical protein0847
NC_013364:3552284:3577830357783035789871158Escherichia coli O111:H- str. 11128, complete genomehypothetical protein0760
NC_010473:3069529:3089584308958430907201137Escherichia coli str. K-12 substr. DH10B, complete genome0751
AC_000091:2976293:299669029966902997484795Escherichia coli W3110 DNA, complete genomehypothetical protein4e-151535
NC_000913:2975659:299605629960562996850795Escherichia coli K12, complete genomehypothetical protein4e-151535
NC_002695:3702344:3735475373547537365331059Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-133476
NC_002655:3769643:3802780380278038038081029Escherichia coli O157:H7 EDL933, complete genomehypothetical protein8e-130464
NC_011353:3805819:3839872383987238408971026Escherichia coli O157:H7 str. EC4115 chromosome, complete genome3e-129462
NC_011353:3805819:384091438409143841477564Escherichia coli O157:H7 str. EC4115 chromosome, complete genome7e-105381
NC_002655:3769643:380382238038223804427606Escherichia coli O157:H7 EDL933, complete genomehypothetical protein5e-105381
NC_002695:3702344:373651737365173737122606Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein5e-105381
NC_000913:2975659:299571129957112996010300Escherichia coli K12, complete genomehypothetical protein3e-48193
AC_000091:2976293:299634529963452996644300Escherichia coli W3110 DNA, complete genomehypothetical protein3e-48193
NC_008258:1934479:1953851195385119576163766Shigella flexneri 5 str. 8401, complete genome2e-29130
NC_010498:1210145:1210145121014512126822538Escherichia coli SMS-3-5, complete genomeputative prophage side tail fiber protein5e-27122
NC_010498:1659328:166250016625001663147648Escherichia coli SMS-3-5, complete genomeprotein FimG-like protein4e-26119
NC_006625:63342:660336603366506474Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequencehypothetical protein4e-1686.3