Pre_GI: BLASTN Hits

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Query: NC_011769:247202 Desulfovibrio vulgaris str. 'Miyazaki F', complete genome

Start: 247202, End: 273805, Length: 26604

Host Lineage: Desulfovibrio vulgaris; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Desulfovibrio vulgaris str. 'Miyazaki F' has one of the best characterized nickel/iron hydrogenases. A sulfate reducing bacterium. These organisms typically grow anaerobically, although some can tolerate oxygen, and they utilize a wide variety of electron acceptors, including sulfate, sulfur, nitrate, and nitrite. A number of toxic metals are reduced, including uranium (VI), chromium (VI) and iron (III), making these organisms of interest as bioremediators. Metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars in losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products. This species is a sulfate reducer commonly found in a variety of soil and aquatic environments.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012796:3600630*3600630368962888999Desulfovibrio magneticus RS-1, complete genome2e-59238BLASTN svgBLASTP svg
NC_018691:318662*31866234772429063Alcanivorax dieselolei B5 chromosome, complete genome5e-42180BLASTN svgBLASTP svg
NC_014973:595153*59515362305327901Geobacter sp. M18 chromosome, complete genome4e-30141BLASTN svgBLASTP svg
NC_007517:35247153524715355369128977Geobacter metallireducens GS-15, complete genome4e-27131BLASTN svgBLASTP svg
NC_011883:1182000*1182000120391521916Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,6e-23117BLASTN svgBLASTP svg
NC_014963:76703476703479552128488Terriglobus saanensis SP1PR4 chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_006087:23750023750026462927130Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_014391:60008346000834602389723064Micromonospora aurantiaca ATCC 27029 chromosome, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_014733:2095996*2095996211863222637Methylovorus sp. MP688 chromosome, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_015733:864959*86495989931634358Pseudomonas putida S16 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_014935:15118351511835153500523171Nitratifractor saLSUginis DSM 16511 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_013446:45116024511602453459922998Comamonas testosteroni CNB-2, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_009434:3434381*3434381346411529735Pseudomonas stutzeri A1501, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_008699:11327901132790117213739348Nocardioides sp. JS614, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015161:2060369*2060369208509924731Deinococcus proteolyticus MRP chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_019940:18378631837863186010522243Thioflavicoccus mobilis 8321 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015656:1830220*1830220184914718928Frankia symbiont of Datisca glomerata chromosome, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_014210:14403614403616380119766Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,9e-1383.8BLASTN svgBLASTP svg
NC_012803:17531381753138177628023143Micrococcus luteus NCTC 2665, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_015410:1202370*1202370122824825879Pseudomonas mendocina NK-01 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012660:819381*81938184312223742Pseudomonas fluorescens SBW25 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010162:10208521102085211023231523795Sorangium cellulosum 'So ce 56', complete genome3e-1281.8BLASTN svgBLASTP svg
NC_004578:1190000*1190000121945029451Pseudomonas syringae pv. tomato str. DC3000, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009439:1174432*1174432119973625305Pseudomonas mendocina ymp, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012969:2136243*2136243222535089108Methylovorus glucosetrophus SIP3-4 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014221:79236379236381768725325Truepera radiovictrix DSM 17093 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_015161:758929*75892978593127003Deinococcus proteolyticus MRP chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014323:46656104665610471710351494Herbaspirillum seropedicae SmR1 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013729:59820005982000600426322264Kribbella flavida DSM 17836, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011027:136954*13695415855321600Chlorobaculum parvum NCIB 8327, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_013173:815696*81569684198426289Desulfomicrobium baculatum DSM 4028, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014814:3926676*3926676394894522270Mycobacterium sp. Spyr1 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_019968:55244055244057659924160Prevotella dentalis DSM 3688 chromosome 2, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_015737:26912462691246276656375318Clostridium sp. SY8519, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010170:4196197*4196197422572429528Bordetella petrii, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_020302:10741201074120109337319254Corynebacterium halotolerans YIM 70093 = DSM 44683, complete1e-0869.9BLASTN svgBLASTP svg
NC_013172:25565172556517257961323097Brachybacterium faecium DSM 4810, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002927:960369*96036999159931231Bordetella bronchiseptica RB50, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_003198:1771432*1771432180593534504Salmonella enterica subsp. enterica serovar Typhi str. CT18,5e-0867.9BLASTN svgBLASTP svg
NC_006677:1255079*1255079128032225244Gluconobacter oxydans 621H, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008346:22513532251353226935218000Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete5e-0867.9BLASTN svgBLASTP svg
NC_010067:11161481116148113933023183Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete5e-0867.9BLASTN svgBLASTP svg
NC_021064:17059611705961172851422554Propionibacterium avidum 44067, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_005125:34202703420270344513224863Gloeobacter violaceus PCC 7421, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006361:4597718*4597718462893531218Nocardia farcinica IFM 10152, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014121:1589389*1589389162248733099Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-0765.9BLASTN svgBLASTP svg
NC_014500:2479814*2479814250755827745Dickeya dadantii 3937 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020064:2697116*2697116272016423049Serratia marcescens FGI94, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020209:47504*4750412622978726Pseudomonas poae RE*1-1-14, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_002929:3305682*3305682333485129170Bordetella pertussis Tohama I, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010645:558974*55897458259923626Bordetella avium 197N, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013922:331847*33184739351061664Natrialba magadii ATCC 43099 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_014815:56030005603000562327720278Micromonospora sp. L5 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_003888:2814360*2814360285868544326Streptomyces coelicolor A3(2), complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007760:14156631415663143934123679Anaeromyxobacter dehalogenans 2CP-C, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008752:41477154147715417135323639Acidovorax avenae subsp. citrulli AAC00-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010162:27177412717741274274925009Sorangium cellulosum 'So ce 56', complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010725:2589014*2589014261596126948Methylobacterium populi BJ001, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012856:29319952931995295427722283Ralstonia pickettii 12D chromosome 1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013716:1918664*1918664194320924546Citrobacter rodentium ICC168, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014931:25114232511423253417122749Variovorax paradoxus EPS chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015138:41758314175831419502219192Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_002607:11786901178690119990321214Halobacterium sp. NRC-1, complete genome3e-0661.9BLASTN svgBLASTP svg