Pre_GI: BLASTP Hits

Some Help

Query: NC_011147:2085241:2097623 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2097623, End: 2098393, Length: 771

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:775636:786733786733787503771Salmonella enterica subsp. enterica serovar Typhimurium str. 798O-antigen export system, permease protein8e-124442
NC_003197:776238:787336787336788106771Salmonella typhimurium LT2, complete genomeputative ABC transporter permease protein8e-124442
NC_010102:2322866:233598123359812336751771Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein8e-124442
NC_011080:780850:791947791947792717771Salmonella enterica subsp. enterica serovar Newport str. SL254,O-antigen export system, permease protein8e-124442
NC_011083:824659:835745835745836515771Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,O-antigen export system, permease protein8e-124442
NC_016810:775649:786747786747787517771Salmonella enterica subsp. enterica serovar Typhimurium strO-antigen export system, permease protein8e-124442
NC_016856:776735:787833787833788603771Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SABC transporter permease8e-124442
NC_016857:775649:786747786747787517771Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74ABC transporter permease8e-124442
NC_016860:816000:826166826166826936771Salmonella enterica subsp. enterica serovar Typhimurium strO-antigen ABC transporter permease protein8e-124442
NC_016863:776734:787832787832788602771Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1ABC transporter permease8e-124442
NC_011094:842038:853136853136853906771Salmonella enterica subsp. enterica serovar Schwarzengrund strO-antigen export system, permease6e-123439
NC_003198:751779:762594762594763364771Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-121434
NC_009446:351042:366787366787367674888Dichelobacter nodosus VCS1703A, complete genomeABC-2 type transporter family protein9e-64243
NC_012880:3125261:314040631404063141209804Dickeya dadantii Ech703, complete genomeABC-2 type transporter2e-45182
NC_012791:821371:840479840479841282804Variovorax paradoxus S110 chromosome 1, complete genomeABC-2 type transporter2e-45182
NC_014722:2260489:227124622712462271899654Burkholderia rhizoxinica HKI 454, complete genomepolysaccharide export ABC transporter permease protein8e-45180
NC_009667:2860818:287482728748272875678852Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceABC-2 type transporter1e-43176
NC_007404:1964935:197525419752541976069816Thiobacillus denitrificans ATCC 25259, complete genomeABC transporter permease protein3e-43175
NC_013592:713036:727786727786728637852Dickeya dadantii Ech586, complete genomeABC-2 type transporter6e-42171
NC_014837:2803447:281318628131862813986801Pantoea sp. At-9b chromosome, complete genomeABC-2 type transporter4e-41168
NC_016818:633750:659825659825660673849Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeABC-type polysaccharide/polyol phosphate export systems permease8e-41167
NC_012522:4299287:430019643001964301068873Rhodococcus opacus B4, complete genomeputative ABC transporter permease protein5e-41167
NC_016799:167362:167362167362168267906Corynebacterium diphtheriae 31A chromosome, complete genomeO-antigen export system permease RfbA1e-37157
NC_016787:135677:139456139456140361906Corynebacterium diphtheriae HC03 chromosome, complete genomeO-antigen export system permease RfbA2e-37156
NC_013093:125363:144188144188145099912Actinosynnema mirum DSM 43827, complete genomeABC-2 type transporter6e-37154
NC_011071:572346:575009575009575869861Stenotrophomonas maltophilia R551-3, complete genomeABC-2 type transporter6e-36150
NC_014500:4257145:426810942681094268897789Dickeya dadantii 3937 chromosome, complete genomeO-antigen export system permease RfbD2e-35149
NC_009445:5388822:538882253888225389664843Bradyrhizobium sp. ORS 278 chromosome, complete genomeO-antigene/LPS export system permease2e-34146
NC_008390:818571:823749823749824531783Burkholderia cepacia AMMD chromosome 1, complete sequenceABC-2 type transporter1e-33143
NC_013159:148180:163178163178164068891Saccharomonospora viridis DSM 43017, complete genomeABC-type polysaccharide/polyol phosphate export systems, permease component1e-33143
NC_012704:2347969:236731123673112368270960Corynebacterium kroppenstedtii DSM 44385, complete genomeABC-type transport system, permease protein2e-33142
NC_010508:933862:939401939401940183783Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceABC-2 type transporter2e-31135
NC_010676:3009980:302826630282663029045780Burkholderia phytofirmans PsJN chromosome 2, complete sequenceABC-2 type transporter3e-30132
NC_011528:1492000:149462714946271495490864Coxiella burnetii CbuK_Q154, complete genomeO-antigen export system permease protein3e-28125
NC_011527:1255998:125786612578661258729864Coxiella burnetii CbuG_Q212, complete genomeO-antigen export system permease protein5e-27121
NC_011985:3892630:391433139143313915167837Agrobacterium radiobacter K84 chromosome 1, complete genomeglycosyl transferase4e-22105
NC_017270:220282:235932235932236705774Vibrio cholerae LMA3984-4 chromosome chromosome I, completeO-antigen export system, permease protein3e-2098.6
NC_007492:4563981:458794445879444588741798Pseudomonas fluorescens PfO-1, complete genomeABC-29e-2097.4
NC_002505:238569:252918252918253712795Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completelipopolysaccharide/O-antigen transport protein1e-1997.1
NC_009457:2764972:277932127793212780115795Vibrio cholerae O395 chromosome 2, complete sequencelipopolysaccharide/O-antigen transport protein1e-1997.1
NC_012578:224559:238906238906239700795Vibrio cholerae M66-2 chromosome I, complete sequencelipopolysaccharide/O-antigen transport protein1e-1997.1
NC_012582:272320:286669286669287463795Vibrio cholerae O395 chromosome chromosome I, complete sequencelipopolysaccharide/O-antigen transport protein1e-1997.1
NC_012668:368305:385274385274386068795Vibrio cholerae MJ-1236 chromosome 1, complete sequenceO-antigen export system permease protein1e-1997.1
NC_016445:2663837:267818626781862678980795Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completelipopolysaccharide/O-antigen transport protein1e-1997.1
NC_016944:238580:252929252929253723795Vibrio cholerae IEC224 chromosome I, complete sequencelipopolysaccharide/O-antigen transport protein1e-1997.1
NC_014816:2446236:247112924711292471926798Asticcacaulis excentricus CB 48 chromosome 1, complete sequence5e-1685.1
NC_002678:6232000:624991762499176250708792Mesorhizobium loti MAFF303099, complete genomeABC transporter permease protein7e-1580.9
NC_009454:2663539:268232226823222683101780Pelotomaculum thermopropionicum SI, complete genomeABC-type polysaccharide/polyol phosphate export systems, permease component4e-1375.1
NC_015224:1763848:177679117767911777573783Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,lipopolysaccharide transport system permease protein1e-1067
NC_015578:1633393:165394816539481654724777Treponema primitia ZAS-2 chromosome, complete genomeO-antigen export system permease RfbA7e-1064.3
NC_008570:3220539:325853632585363259321786Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeABC transporter, permease protein1e-0860.5
NC_010337:803748:834304834304835092789Heliobacterium modesticaldum Ice1, complete genomeabc-2 transporter, putative2e-0859.7
NC_014377:480158:489569489569490345777Thermosediminibacter oceani DSM 16646 chromosome, complete genomeABC-2 type transporter2e-0756.2
NC_014315:1169910:117755711775571178360804Nitrosococcus watsoni C-113 chromosome, complete genomeABC-2 type transporter6e-0754.7
NC_015660:296488:310816310816311592777Geobacillus thermoglucosidasius C56-YS93 chromosome, completeABC-2 type transporter9e-0753.9
NC_011769:3401353:341787134178713418695825Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeABC-2 type transporter2e-0653.1
NC_019977:1245894:127416712741671275063897Methanomethylovorans hollandica DSM 15978, complete genomeABC-type polysaccharide/polyol phosphate export systems, permease component2e-0653.1