Pre_GI: BLASTP Hits

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Query: NC_010322:768849:785005 Pseudomonas putida GB-1 chromosome, complete genome

Start: 785005, End: 785511, Length: 507

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008027:4889662:489179248917924892286495Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily2e-35148
NC_014640:2693060:269306026930602693566507Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI2e-31134
NC_016822:4889656:489396448939644894485522Shigella sonnei 53G, complete genomeRNA polymerase sigma factor FecI2e-30131
NC_012759:4433500:445447244544724454993522Escherichia coli BW2952 chromosome, complete genomeRNA polymerase sigma factor FecI2e-30131
NC_010473:4596500:461754546175454618066522Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; RNA polymerase, sigma 19 factor2e-30131
AC_000091:4501430:452239445223944522915522Escherichia coli W3110 DNA, complete genomeRNA polymerase, sigma 19 factor2e-30131
NC_008027:2648560:265202626520262652541516Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily2e-28125
NC_010322:768849:792731792731793237507Pseudomonas putida GB-1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor4e-28124
NC_015556:2265940:230300923030092303524516Pseudomonas fulva 12-X chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-28122
NC_012962:4591295:459787345978734598394522Photorhabdus asymbiotica, complete genomeprobable rna polymerase sigma factor feci2e-27121
NC_005966:1780468:178413917841391784624486Acinetobacter sp. ADP1, complete genomealternative RNAP sigma factor required for fecA promoter recognition and ferric citrate transport; activated by FecR2e-27121
NC_014228:3591758:359930735993073599843537Xenorhabdus nematophila ATCC 19061, complete genomeProbable RNA polymerase sigma factor fecI1e-26119
NC_004547:1174650:120912612091261209647522Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeRNA polymerase sigma-70 factor4e-26117
NC_007974:934000:953531953531954031501Ralstonia metallidurans CH34 chromosome 2, complete sequencesigma-24 (FecI-like)7e-26116
NC_018691:318662:319603319603320118516Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily7e-26116
NC_005126:5188976:519303851930385193559522Photorhabdus luminescens subsp. laumondii TTO1, complete genomeRNA polymerase sigma-70 factor6e-26116
NC_015572:427732:454649454649455155507Methylomonas methanica MC09 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-25114
NC_012560:201237:217624217624218127504Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family4e-25114
NC_021150:201237:217624217624218127504Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family4e-25114
NC_016612:3843358:387250338725033873024522Klebsiella oxytoca KCTC 1686 chromosome, complete genomeRNA polymerase sigma factor FecI4e-25114
NC_004757:2657490:265749026574902658047558Nitrosomonas europaea ATCC 19718, complete genomeProbable fecI Specialized sigma subunits of RNA polymerase9e-25112
NC_018691:1293449:131432713143271314809483Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma factor FecI1e-23108
NC_014540:2908912:291046129104612911012552Burkholderia sp. CCGE1003 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily2e-22104
NC_016830:3697173:371576837157683716166399Pseudomonas fluorescens F113 chromosome, complete genomeECF subfamily RNA polymerase sigma-70 factor3e-21101
NC_015410:1324313:133080213308021331320519Pseudomonas mendocina NK-01 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor3e-21100
NC_014640:2693060:269731826973182697830513Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI1e-1995.9
NC_014640:5047201:506631150663115066877567Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma-24 subunit6e-1993.2
NC_014640:5047201:506220250622025062732531Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI6e-1890.1
NC_018691:359695:360597360597361097501Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily6e-1890.1
NC_016830:2168523:218617921861792186661483Pseudomonas fluorescens F113 chromosome, complete genomeprotein FpvI4e-1684
NC_015563:4093650:409834140983414098964624Delftia sp. Cs1-4 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor4e-1684
NC_007953:1088933:108893310889331089469537Burkholderia xenovorans LB400 chromosome 3, complete sequenceSigma-24 (FecI)7e-1683.2
NC_014664:1360524:137481013748101375316507Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1271.6
NC_021150:2546000:254610825461082546812705Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family2e-1271.6
NC_012560:2546000:254609625460962546800705Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family2e-1271.6
NC_011144:2710876:272475927247592725310552Phenylobacterium zucineum HLK1, complete genomeRNA polymerase sigma-70 factor, ECF subfamily1e-1169.3
NC_010510:339879:346474346474347019546Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1168.9
NC_007005:2191500:221606422160642216600537Pseudomonas syringae pv. syringae B728a, complete genomeRNA polymerase sigma-70 factor1e-0962.4
NC_015844:1188360:120641312064131207012600Zobellia galactanivorans, complete genomeRNA polymerase ECF-type sigma factor2e-0961.6
NC_017075:1970168:197477419747741975262489Rubrivivax gelatinosus IL144, complete genomeECF subfamily RNA polymerase sigma-70 factor4e-0960.8
NC_007947:1429165:144176714417671442282516Methylobacillus flagellatus KT, complete genomesigma-24 (FecI-like)5e-0960.5
NC_007677:241846:245884245884246468585Salinibacter ruber DSM 13855, complete genomepossible sigma-70 factor, ECF subfamily, putative1e-0858.9
NC_014032:269844:274798274798275382585Salinibacter ruber M8 chromosome, complete genomeRNA polymerase sigma factor1e-0858.9
NC_015177:2642368:266242426624242662972549Pedobacter saltans DSM 12145 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0857.4
NC_003909:1205605:122684212268421227327486Bacillus cereus ATCC 10987, complete genomeRNA polymerase sigma-70 factor7e-0856.6
NC_014375:1146328:117242311724231172977555Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0856.2
NC_014910:2779573:279193627919362792454519Alicycliphilus denitrificans BC chromosome, complete genomeRNA polymerase sigma factor, sigma-70 family9e-0856.2
NC_008686:1592073:161056416105641611091528Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily9e-0856.2
NC_015976:2150676:215816421581642158709546Sphingobium sp. SYK-6, complete genomeRNA polymerase ECF-type sigma factor2e-0755.5
NC_010338:2136193:214052621405262141062537Caulobacter sp. K31, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0754.3
NC_016112:1735044:174948717494871749993507Methylomicrobium alcaliphilum chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit4e-0753.9
NC_008687:133728:154267154267154779513Paracoccus denitrificans PD1222 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily7e-0753.1
NC_009937:5033152:503490050349005035424525Azorhizobium caulinodans ORS 571, complete genomeFecI-like protein1e-0652.4
NC_014100:2782000:280274428027442803247504Caulobacter segnis ATCC 21756 chromosome, complete genomeRNA polymerase sigma-24 factor3e-0651.2
NC_015497:4683741:470916247091624709653492Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0650.4
NC_004193:3215500:321633632163363216875540Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase ECF-type sigma factor6e-0650.1
NC_015593:2841856:288400728840072884540534Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeECF subfamily RNA polymerase sigma-24 subunit7e-0650.1
NC_013421:1954915:197163419716341972143510Pectobacterium wasabiae WPP163, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0650.1