Pre_GI: BLASTP Hits

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Query: NC_009439:4267356:4282231 Pseudomonas mendocina ymp, complete genome

Start: 4282231, End: 4282422, Length: 192

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002516:4747154:476292847629284763119192Pseudomonas aeruginosa PAO1, complete genome50S ribosomal protein L294e-1993.2
NC_012560:603447:611350611350611541192Azotobacter vinelandii DJ, complete genome50S ribosomal protein L295e-1993.2
NC_021150:603447:611350611350611541192Azotobacter vinelandii CA6, complete genome50S ribosomal protein L295e-1993.2
NC_015556:717993:722537722537722728192Pseudomonas fulva 12-X chromosome, complete genomeribosomal protein L295e-1993.2
NC_013282:3962188:399348639934863993677192Cronobacter turicensis, complete genome50S ribosomal protein L293e-1373.9
NC_007645:6327428:634075363407536340944192Hahella chejuensis KCTC 2396, complete genomeribosomal protein L293e-1373.9
NC_017047:370837:386380386380386571192Rahnella aquatilis HX2 chromosome, complete genome50S ribosomal protein L293e-1373.9
NC_015061:366552:383726383726383917192Rahnella sp. Y9602 chromosome, complete genomeribosomal protein L293e-1373.9
NC_013508:3387272:339916333991633399354192Edwardsiella tarda EIB202, complete genome50S ribosomal protein L298e-1372.4
NC_009092:179226:183724183724183915192Shewanella loihica PV-4, complete genomeribosomal protein L298e-1165.9
NC_003116:93576:110632110632110823192Neisseria meningitidis Z2491, complete genome50S ribosomal protein L296e-1062.8
NC_002946:1786000:180224418022441802435192Neisseria gonorrhoeae FA 1090, complete genomeputative 50S ribosomal subunit protein L296e-1062.8
NC_008767:136958:143614143614143805192Neisseria meningitidis FAM18, complete genome50S ribosomal protein L296e-1062.8
NC_003112:149593:155923155923156114192Neisseria meningitidis MC58, complete genome50S ribosomal protein L296e-1062.8
NC_010120:2029880:204584120458412046032192Neisseria meningitidis 053442, complete genome50S ribosomal protein L296e-1062.8
NC_011035:2027916:203654620365462036737192Neisseria gonorrhoeae NCCP11945 chromosome, complete genome50S ribosomal protein L296e-1062.8
NC_013016:2014368:203042020304202030611192Neisseria meningitidis alpha14 chromosome, complete genome50S ribosomal protein L296e-1062.8
NC_017501:147933:155008155008155199192Neisseria meningitidis 8013, complete genome50S ribosomal protein L296e-1062.8
NC_017505:148644:154986154986155177192Neisseria meningitidis alpha710 chromosome, complete genome50S ribosomal protein L296e-1062.8
NC_017511:1936331:194496119449611945152192Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genome50S ribosomal protein L296e-1062.8
NC_017518:150991:157333157333157524192Neisseria meningitidis NZ-05/33 chromosome, complete genome50S ribosomal protein L296e-1062.8
NC_017517:153379:159411159411159602192Neisseria meningitidis M01-240355 chromosome, complete genome50S ribosomal protein L296e-1062.8
NC_017516:149657:155985155985156176192Neisseria meningitidis H44/76 chromosome, complete genome50S ribosomal protein L296e-1062.8
NC_017515:155634:161964161964162155192Neisseria meningitidis M04-240196 chromosome, complete genome50S ribosomal protein L296e-1062.8
NC_017514:2096452:211250621125062112697192Neisseria meningitidis M01-240149 chromosome, complete genome50S ribosomal protein L296e-1062.8
NC_017513:141291:147947147947148138192Neisseria meningitidis G2136 chromosome, complete genome50S ribosomal protein L296e-1062.8
NC_017512:2087098:210415421041542104345192Neisseria meningitidis WUE 2594, complete genome50S ribosomal protein L296e-1062.8
NC_014752:98117:104224104224104415192Neisseria lactamica ST-640, complete genome50S ribosomal protein L291e-0962
NC_016112:3840053:385916538591653859356192Methylomicrobium alcaliphilum chromosome, complete genome50S ribosomal protein L291e-0962
NC_010645:31500:362503625036441192Bordetella avium 197N, complete genome50S ribosomal protein L292e-0960.8
NC_016632:1496000:151284215128421513036195Serratia symbiotica str. 'Cinara cedri' chromosome, complete50S ribosomal protein L294e-0960.1
NC_015572:4209000:422263242226324222823192Methylomonas methanica MC09 chromosome, complete genome50S ribosomal protein L295e-0959.7
NC_012846:1467446:147984914798491480049201Bartonella grahamii as4aup, complete genome50S ribosomal protein L292e-0858.2
NC_020301:1084993:109285610928561093056201Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genome50S ribosomal protein L293e-0857
NC_015581:128350:136301136301136492192Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome50S ribosomal protein L295e-0856.6
NC_014932:985882:102560810256081025808201Bartonella clarridgeiae 73, complete genome50S ribosomal protein L292e-0754.7
NC_016002:379692:393003393003393191189Pseudogulbenkiania sp. NH8B, complete genome50S ribosomal protein L292e-0754.7
NC_005955:947500:961663961663961863201Bartonella quintana str. Toulouse, complete genome50s ribosomal protein l292e-0754.3
NC_002939:3108907:312484131248413125035195Geobacter sulfurreducens PCA, complete genomeribosomal protein L293e-0753.9
NC_005956:1139342:115180111518011152001201Bartonella henselae str. Houston-1, complete genome50S ribosomal protein l293e-0753.9
NC_010161:1598000:160279416027941602994201Bartonella tribocorum CIP 105476, complete genome50S ribosomal protein L293e-0753.9
NC_008783:671349:689833689833690033201Bartonella bacilliformis KC583, complete genomeribosomal protein L294e-0753.5
NC_019814:125611:140698140698140910213Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonaslarge subunit ribosomal protein L296e-0753.1
NC_017256:545204:556380556380556577198Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,50S ribosomal protein L295e-0753.1
NC_007947:290864:292317292317292526210Methylobacillus flagellatus KT, complete genomeribosomal protein L295e-0753.1
NC_020300:960692:975014975014975214201Bartonella australis Aust/NH1, complete genome50S ribosomal protein L294e-0753.1
NC_009727:1822877:182729118272911827488198Coxiella burnetii Dugway 7E9-12, complete genomeribosomal protein L296e-0752.8
NC_011527:1688447:169286016928601693057198Coxiella burnetii CbuG_Q212, complete genomeLSU ribosomal protein L29P6e-0752.8
NC_002971:211331:229294229294229491198Coxiella burnetii RSA 493, complete genomeribosomal protein L296e-0752.8
NC_011528:386417:405761405761405958198Coxiella burnetii CbuK_Q154, complete genomeLSU ribosomal protein L29P6e-0752.8
NC_010117:285230:304566304566304763198Coxiella burnetii RSA 331, complete genomeribosomal protein L296e-0752.8
NC_002528:546500:555460555460555657198Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete50S ribosomal protein L299e-0752.4
NC_007759:291368:318103318103318300198Syntrophus aciditrophicus SB, complete genomeLSU ribosomal protein L29P8e-0752.4
NC_005085:4499500:451072145107214510909189Chromobacterium violaceum ATCC 12472, complete genome50S ribosomal protein L291e-0652
NC_003911:480202:496675496675496875201Silicibacter pomeroyi DSS-3, complete genomeribosomal protein L291e-0652
NC_017259:523840:533774533774533971198Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,50S ribosomal protein L291e-0651.6
NC_015731:2950874:297132929713292971526198Nitrosomonas sp. Is79A3 chromosome, complete genome50S ribosomal protein L293e-0650.8
NC_020134:2801199:281853728185372818737201Clostridium stercorarium subsp. stercorarium DSM 8532, complete50S ribosomal protein L293e-0650.4
NC_014315:2327083:234217123421712342368198Nitrosococcus watsoni C-113 chromosome, complete genome50S ribosomal protein L296e-0649.3
NC_016893:181951:201232201232201426195Wigglesworthia glossinidia endosymbiont of Glossina morsitans50S ribosomal protein L297e-0649.3