Pre_GI: BLASTP Hits

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Query: NC_008258:1784637:1789516 Shigella flexneri 5 str. 8401, complete genome

Start: 1789516, End: 1790340, Length: 825

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:1818897:182371918237191824600882Shigella sonnei 53G, complete genomearomatic amino acid exporter2e-140498
NC_007384:1737885:174439717443971745278882Shigella sonnei Ss046, complete genomehypothetical protein2e-140498
NC_017328:1835108:184345518434551844336882Shigella flexneri 2002017 chromosome, complete genomehypothetical protein9e-140496
NC_004741:1823000:182785818278581828739882Shigella flexneri 2a str. 2457T, complete genomehypothetical protein9e-140496
NC_004337:1783645:179013517901351791016882Shigella flexneri 2a str. 301, complete genomehypothetical protein9e-140496
NC_013941:1857724:187217418721741873055882Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-139494
NC_013008:1971662:198128619812861982167882Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-139494
NC_011353:1971145:198231019823101983191882Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein3e-139494
NC_002655:2015000:201988220198822020763882Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-139494
NC_002695:2056545:206771020677102068534825Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein8e-139493
NC_010498:1700447:170462317046231705504882Escherichia coli SMS-3-5, complete genomehypothetical protein4e-138490
NC_011750:1809943:182346818234681824292825Escherichia coli IAI39 chromosome, complete genomehypothetical protein6e-138490
NC_012917:2362725:236272523627252363636912Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein8e-85313
NC_008752:1523768:152376815237681524679912Acidovorax avenae subsp. citrulli AAC00-1, complete genomeprotein of unknown function DUF6, transmembrane1e-74280
NC_014323:3669704:367214836721483673071924Herbaspirillum seropedicae SmR1 chromosome, complete genomedrug/metabolite transporter (DMT) superfamily permease4e-73274
NC_007947:577315:579723579723580640918Methylobacillus flagellatus KT, complete genomeprotein of unknown function DUF6, transmembrane5e-52204
NC_015563:6357653:635671063567106357696987Delftia sp. Cs1-4 chromosome, complete genomehypothetical protein6e-46184
NC_014656:1536540:155667915566791557635957Bifidobacterium longum subsp. longum BBMN68 chromosome, completemethyl viologen exporter4e-37154
NC_010511:5467009:548430854843085485210903Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein5e-0652