Pre_GI: BLASTP Hits

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Query: NC_006511:3364448:3373380 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 3373380, End: 3373499, Length: 120

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010473:4256000:426935742693574269476120Escherichia coli str. K-12 substr. DH10B, complete genome5S ribosomal RNA1e-1478.6
NC_002695:4153394:415842841584284158547120Escherichia coli O157:H7 str. Sakai, complete genome5S ribosomal RNA1e-1478.6
NC_006511:4119332:412993541299354130054120Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC5S ribosomal RNA1e-1478.6
NC_006511:3364448:337313533731353373254120Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC5S ribosomal RNA1e-1478.6
CU928160:2785792:279312427931242793243120Escherichia coli IAI1 chromosome, complete genomeribosomal RNA 5S1e-1478.6
NC_000913:4159090:416966041696604169779120Escherichia coli K12, complete genome5S ribosomal RNA1e-1478.6
NC_007946:3683371:369318836931883693307120Escherichia coli UTI89, complete genome5S ribosomal RNA2e-1477.8
NC_011750:4543135:455164845516484551767120Escherichia coli IAI39 chromosome, complete genomeribosomal RNA 5S2e-1477.8
NC_003198:3586000:359478635947863594905120Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-1477.8
NC_002695:4153394:415867341586734158792120Escherichia coli O157:H7 str. Sakai, complete genome5S ribosomal RNA2e-1477.8
NC_003198:2703013:271225827122582712377120Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-1477.8
CU928160:4248621:426078242607824260901120Escherichia coli IAI1 chromosome, complete genomeribosomal RNA 5S4e-1476.6
NC_011184:597496:610253610253610368116Vibrio fischeri MJ11 chromosome I, complete sequence5S ribosomal RNA9e-0958.9
NC_011184:325797:346527346527346642116Vibrio fischeri MJ11 chromosome I, complete sequence5S ribosomal RNA9e-0958.9