Pre_GI: BLASTP Hits

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Query: NC_004603:2235142:2251354 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 2251354, End: 2253861, Length: 2508

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012973:967380:9750349750349761221089Helicobacter pylori B38 chromosome, complete genome1e-1172.8
NC_016593:1466226:1474111147411114757901680Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete5-methylcytosine-specific restriction enzyme3e-1997.8
NC_015677:1:1220712207150232817Ramlibacter tataouinensis TTB310 chromosome, complete genome5-methylcytosine-specific restriction enzyme B4e-0860.8
NC_015958:1465631:1494003149400314957541752Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeATPase2e-20102
NC_013406:1217385:1248785124878512510072223Paenibacillus sp. Y412MC10 chromosome, complete genomeATPase2e-1688.6
NC_016023:1839503:1847540184754018495672028Bacillus coagulans 36D1 chromosome, complete genomeATPase1e-1792.8
NC_015977:3215770:3228792322879232309722181Roseburia hominis A2-183 chromosome, complete genomeATPase1e-0862.8
NC_009338:5537473:5548514554851455496291116Mycobacterium gilvum PYR-GCK chromosome, complete genomeATPase AAA3e-1068.2
NC_014206:2266000:2283940228394022856191680Geobacillus sp. C56-T3 chromosome, complete genomeATPase AAA5e-1894
NC_013411:2191514:2193597219359721952761680Geobacillus sp. Y412MC61, complete genomeATPase associated with various cellular activities AAA_55e-1997.1
NC_014209:1392115:1392115139211513938661752Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,ATPase associated with various cellular activities AAA_52e-21105
NC_014915:1331459:1333542133354213352211680Geobacillus sp. Y412MC52 chromosome, complete genomeATPase associated with various cellular activities AAA_55e-1997.1
NC_014152:421481:4447174447174467562040Thermincola sp. JR, complete genomeATPase associated with various cellular activities AAA_54e-1687.4
NC_008025:1588348:1593014159301415951642151Deinococcus geothermalis DSM 11300, complete genomeATPase associated with various cellular activities, AAA_54e-1067.4
NC_011770:2499432:2506736250673625088982163Pseudomonas aeruginosa LESB58, complete genomeGTPase subunit of restriction endonuclease-like1e-0862.4
NC_017195:3919000:3935181393518139372022022Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completehypothetical protein3e-27124
NC_006510:1400000:1400171140017114018501680Geobacillus kaustophilus HTA426, complete genomehypothetical protein8e-1996.3
NC_007503:1534162:1541898154189815436071710Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein2e-1688.6
NC_017379:996500:1004179100417910063802202Helicobacter pylori Puno135 chromosome, complete genomehypothetical protein3e-1481.3
NC_017355:997089:1005641100564110066841044Helicobacter pylori v225d chromosome, complete genomehypothetical protein4e-1377.4
NC_006513:2708213:2716488271648827189502463Azoarcus sp. EbN1, complete genomehypothetical protein2e-0861.6
NC_006138:2683545:2720198272019827228042607Desulfotalea psychrophila LSv54, complete genomehypothetical protein2e-37157
NC_017068:1450049:1457174145717414597442571Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein2e-1481.6
NC_015680:21500:2998029980319111932Pyrococcus yayanosii CH1 chromosome, complete genomehypothetical protein1e-1379
NC_017378:986611:9942389942389964482211Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein9e-1273.2
NC_009659:3815966:3823708382370838253331626Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein2e-0758.9
NC_015740:2614317:2622730262273026252372508Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein0689
NC_013851:3321853:3334777333477733369632187Allochromatium vinosum DSM 180 chromosome, complete genomehypothetical protein7e-1583.2
NC_013790:85889:8768487684904522769Methanobrevibacter ruminantium M1 chromosome, complete genomehypothetical protein1e-1379.3
NC_000915:453958:4687774687774703331557Helicobacter pylori 26695, complete genomehypothetical protein3e-1274.3
NC_011092:9974:1823718237204442208Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-1068.6
NC_020210:1275031:1275031127503112767101680Geobacillus sp. GHH01, complete genomehypothetical protein5e-1997.1
NC_012108:1694817:1701074170107417036442571Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein6e-1480.1
NC_013410:2691437:2697672269767227001192448Fibrobacter succinogenes subsp. succinogenes S85 chromosome,hypothetical protein2e-1275.5
NC_015682:1074263:1093771109377110961672397Thermodesulfobacterium sp. OPB45 chromosome, complete genomehypothetical protein5e-1170.5
NC_007907:808893:8140608140608167232664Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-0861.2
NC_005085:1:80928092101042013Chromobacterium violaceum ATCC 12472, complete genomeprobable site-specific DNA-methyltransferase, cytosine-specific2e-0965.5
NC_019896:2805098:2813625281362528148811257Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completePutative GTPase subunit of restriction endonuclease1e-22108