Pre_GI: BLASTN Hits

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Query: NC_012917:3378759 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3378759, End: 3397047, Length: 18289

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_020064:35175003517500354133523836Serratia marcescens FGI94, complete genome01711BLASTN svgBLASTP svg
NC_015566:40490004049000406909920100Serratia sp. AS12 chromosome, complete genome01540BLASTN svgBLASTP svg
NC_012912:12956531295653131862422972Dickeya zeae Ech1591, complete genome01239BLASTN svgBLASTP svg
NC_014500:35197223519722353859918878Dickeya dadantii 3937 chromosome, complete genome01205BLASTN svgBLASTP svg
NC_009800:26517302651730267629124562Escherichia coli HS, complete genome01102BLASTN svgBLASTP svg
NC_006905:26300002630000265438924390Salmonella enterica subsp. enterica serovar Choleraesuis str01061BLASTN svgBLASTP svg
NC_013282:3216226*3216226324341527190Cronobacter turicensis, complete genome01011BLASTN svgBLASTP svg
NC_004741:25930122593012261557622565Shigella flexneri 2a str. 2457T, complete genome01009BLASTN svgBLASTP svg
NC_020063:11940001194000121676222763Enterobacteriaceae bacterium strain FGI 57, complete genome0969BLASTN svgBLASTP svg
NC_010634:32508103250810326864117832Yersinia pseudotuberculosis PB1/+, complete genome0959BLASTN svgBLASTP svg
NC_006155:33333033333303335118117879Yersinia pseudotuberculosis IP 32953, complete genome0959BLASTN svgBLASTP svg
NC_010465:14271701427170145224325074Yersinia pseudotuberculosis YPIII, complete genome0944BLASTN svgBLASTP svg
NC_003143:31912463191246321275521510Yersinia pestis CO92, complete genome0936BLASTN svgBLASTP svg
NC_004088:15104671510467153309222626Yersinia pestis KIM, complete genome0936BLASTN svgBLASTP svg
NC_005810:3021913*3021913304567123759Yersinia pestis biovar Microtus str. 91001, complete genome0936BLASTN svgBLASTP svg
NC_008149:14403711440371146301222642Yersinia pestis Nepal516, complete genome0936BLASTN svgBLASTP svg
NC_008150:25747942574794259632821535Yersinia pestis Antiqua, complete genome0936BLASTN svgBLASTP svg
NC_010159:409500*40950045168242183Yersinia pestis Angola, complete genome0936BLASTN svgBLASTP svg
NC_013956:31814213181421320344322023Pantoea ananatis LMG 20103 chromosome, complete genome0904BLASTN svgBLASTP svg
NC_012214:12126161212616123625023635Erwinia pyrifoliae Ep1/96, complete genome0876BLASTN svgBLASTP svg
NC_012779:30163273016327304089024564Edwardsiella ictaluri 93-146, complete genome0688BLASTN svgBLASTP svg
NC_005126:32049803204980322748422505Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-163583BLASTN svgBLASTP svg
NC_007712:29780002978000300020322204Sodalis glossinidius str. 'morsitans', complete genome2e-160573BLASTN svgBLASTP svg
NC_014500:3744705*3744705376630221598Dickeya dadantii 3937 chromosome, complete genome7e-102379BLASTN svgBLASTP svg
NC_015424:25107642510764253353522772Aeromonas veronii B565 chromosome, complete genome3e-92347BLASTN svgBLASTP svg
NC_013456:30115183011518303472823211Vibrio sp. Ex25 chromosome 1, complete genome1e-87331BLASTN svgBLASTP svg
NC_010634:3269010*3269010329227823269Yersinia pseudotuberculosis PB1/+, complete genome9e-80305BLASTN svgBLASTP svg
NC_009348:19688261968826198790619081Aeromonas salmonicida subsp. salmonicida A449, complete genome3e-70274BLASTN svgBLASTP svg
NC_006370:84720484720486812520922Photobacterium profundum SS9 chromosome 1, complete sequence1e-63252BLASTN svgBLASTP svg
NC_004347:34373693437369345870921341Shewanella oneidensis MR-1, complete genome5e-38167BLASTN svgBLASTP svg
NC_015964:1389628*1389628140919019563Haemophilus parainfluenzae T3T1, complete genome2e-34155BLASTN svgBLASTP svg
NC_015733:11799771179977119809918123Pseudomonas putida S16 chromosome, complete genome1e-29139BLASTN svgBLASTP svg
NC_010120:10658331065833109411728285Neisseria meningitidis 053442, complete genome7e-22113BLASTN svgBLASTP svg
NC_013416:1091432*1091432110961418183Aggregatibacter actinomycetemcomitans D11S-1, complete genome3e-21111BLASTN svgBLASTP svg
NC_008463:12930791293079133019337115Pseudomonas aeruginosa UCBPP-PA14, complete genome1e-20109BLASTN svgBLASTP svg
NC_011071:18775001877500190261425115Stenotrophomonas maltophilia R551-3, complete genome6e-19103BLASTN svgBLASTP svg
NC_018691:1293449*1293449131822524777Alcanivorax dieselolei B5 chromosome, complete genome6e-19103BLASTN svgBLASTP svg
NC_011901:1122357*1122357114576023404Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete4e-1797.6BLASTN svgBLASTP svg
NC_002940:1234410*1234410125802923620Haemophilus ducreyi 35000HP, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_007005:14159621415962143723321272Pseudomonas syringae pv. syringae B728a, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010943:20911992091199211510023902Stenotrophomonas maltophilia K279a, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_007963:81414881414884084326696Chromohalobacter salexigens DSM 3043, complete genome1e-1385.7BLASTN svgBLASTP svg
NC_003198:4513900*4513900454590232003Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-1383.8BLASTN svgBLASTP svg
NC_015947:18778871877887190023222346Burkholderia sp. JV3 chromosome, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_011992:1318691*1318691134516726477Acidovorax ebreus TPSY, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_015572:427732*42773245612728396Methylomonas methanica MC09 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_014910:2015627*2015627203840722781Alicycliphilus denitrificans BC chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_013592:956829*95682998781830990Dickeya dadantii Ech586, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_014500:1066911*1066911109884731937Dickeya dadantii 3937 chromosome, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_012559:73185973185975630324445Laribacter hongkongensis HLHK9, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_014532:722151*72215174114018990Halomonas elongata DSM 2581, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_013421:70100570100575174450740Pectobacterium wasabiae WPP163, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_012912:40718594071859411755145693Dickeya zeae Ech1591, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_002928:13517501351750137549523746Bordetella parapertussis 12822, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_015138:20697392069739210074231004Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete2e-0661.9BLASTN svgBLASTP svg
NC_014315:26594792659479268272523247Nitrosococcus watsoni C-113 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013592:80428880428883459430307Dickeya dadantii Ech586, complete genome8e-0660BLASTN svgBLASTP svg