Pre_GI: BLASTN Hits

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Query: NC_008148:2498000 Rubrobacter xylanophilus DSM 9941, complete genome

Start: 2498000, End: 2550851, Length: 52852

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008148:1567703*1567703159210324401Rubrobacter xylanophilus DSM 9941, complete genome03646BLASTN svgBLASTP svg
NC_008148:79261079261081163719028Rubrobacter xylanophilus DSM 9941, complete genome02551BLASTN svgBLASTP svg
NC_008148:58303058303060960026571Rubrobacter xylanophilus DSM 9941, complete genome01965BLASTN svgBLASTP svg
NC_008148:18598881859888192073060843Rubrobacter xylanophilus DSM 9941, complete genome0775BLASTN svgBLASTP svg
NC_008148:22310452231045228514954105Rubrobacter xylanophilus DSM 9941, complete genome0739BLASTN svgBLASTP svg
NC_008148:30248673024867304671521849Rubrobacter xylanophilus DSM 9941, complete genome1e-155559BLASTN svgBLASTP svg
NC_008148:2290806*2290806231729826493Rubrobacter xylanophilus DSM 9941, complete genome1e-124456BLASTN svgBLASTP svg
NC_015145:26937492693749273661842870Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome6e-43184BLASTN svgBLASTP svg
NC_014118:13311641331164135459923436Burkholderia sp. CCGE1002 chromosome chromosome 2, complete1e-41180BLASTN svgBLASTP svg
NC_013757:27068352706835275100644172Geodermatophilus obscurus DSM 43160, complete genome2e-40176BLASTN svgBLASTP svg
NC_019673:13847951384795141142926635Saccharothrix espanaensis DSM 44229 complete genome2e-40176BLASTN svgBLASTP svg
NC_011891:315182*31518233809922918Anaeromyxobacter dehalogenans 2CP-1, complete genome1e-34157BLASTN svgBLASTP svg
NC_011145:306623*30662333037323751Anaeromyxobacter sp. K, complete genome3e-32149BLASTN svgBLASTP svg
NC_007492:36555453655545368613730593Pseudomonas fluorescens PfO-1, complete genome5e-31145BLASTN svgBLASTP svg
NC_008278:132000*13200015230120302Frankia alni ACN14a, complete genome8e-30141BLASTN svgBLASTP svg
NC_007908:1600244*1600244163173231489Rhodoferax ferrireducens T118, complete genome2e-27133BLASTN svgBLASTP svg
NC_007760:20947462094746212286228117Anaeromyxobacter dehalogenans 2CP-C, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_014221:55476455476457824523482Truepera radiovictrix DSM 17093 chromosome, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_003888:7561923*7561923764778785865Streptomyces coelicolor A3(2), complete genome7e-1281.8BLASTN svgBLASTP svg
NC_014006:924417*92441794759923183Sphingobium japonicum UT26S chromosome 1, complete genome7e-1281.8BLASTN svgBLASTP svg
NC_014550:23555002355500237821322714Arthrobacter arilaitensis Re117, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_002944:12854361285436132132435889Mycobacterium avium subsp. paratuberculosis K-10, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_015594:214500*21450024065526156Sphingobium chlorophenolicum L-1 chromosome chromosome 2, complete3e-0869.9BLASTN svgBLASTP svg
NC_007205:1232734*1232734126104828315Candidatus Pelagibacter ubique HTCC1062, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_008278:2732890*2732890278559152702Frankia alni ACN14a, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_018644:1197897*1197897122359925703Alpha proteobacterium HIMB59 chromosome, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_018643:85791185791191039052480Alpha proteobacterium HIMB5 chromosome, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_008699:22606062260606228821627611Nocardioides sp. JS614, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_002755:16841611684161170880524645Mycobacterium tuberculosis CDC1551, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_002945:16807511680751170398323233Mycobacterium bovis AF2122/97, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_008769:17090781709078173231123234Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_009525:16855221685522171115225631Mycobacterium tuberculosis H37Ra, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_009565:16886421688642171216323522Mycobacterium tuberculosis F11, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_012207:16819711681971170520423234Mycobacterium bovis BCG str. Tokyo 172, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_013446:2237854*2237854227259934746Comamonas testosteroni CNB-2, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_015848:17081761708176173271724542Mycobacterium canettii CIPT 140010059, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_000962:16840051684005170853924535Mycobacterium tuberculosis H37Rv, complete genome6e-0661.9BLASTN svgBLASTP svg