Pre_GI: BLASTN Hits

Some Help

Query: NC_006155:2208686 Yersinia pseudotuberculosis IP 32953, complete genome

Start: 2208686, End: 2232425, Length: 23740

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a fully virulent serotype I strain isolated from a human patient. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010634:2124185*2124185214874924565Yersinia pseudotuberculosis PB1/+, complete genome019690BLASTN svgBLASTP svg
NC_008149:2517538*2517538254015722620Yersinia pestis Nepal516, complete genome04272BLASTN svgBLASTP svg
NC_005810:1663672*1663672168742323752Yersinia pestis biovar Microtus str. 91001, complete genome04272BLASTN svgBLASTP svg
NC_004088:2691565*2691565271495023386Yersinia pestis KIM, complete genome04272BLASTN svgBLASTP svg
NC_003143:2101902*2101902212009918198Yersinia pestis CO92, complete genome04179BLASTN svgBLASTP svg
NC_010159:2128157*2128157214655218396Yersinia pestis Angola, complete genome04072BLASTN svgBLASTP svg
NC_008150:1384102*1384102140260518504Yersinia pestis Antiqua, complete genome04064BLASTN svgBLASTP svg
NC_012912:3853377*3853377389607042694Dickeya zeae Ech1591, complete genome01108BLASTN svgBLASTP svg
NC_012912:2901021*2901021292518824168Dickeya zeae Ech1591, complete genome0862BLASTN svgBLASTP svg
NC_006155:21168342116834213909922266Yersinia pseudotuberculosis IP 32953, complete genome8e-53216BLASTN svgBLASTP svg
NC_015224:2061951*2061951208443822488Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,5e-51210BLASTN svgBLASTP svg
NC_010465:2582080*2582080260359921520Yersinia pseudotuberculosis YPIII, complete genome5e-51210BLASTN svgBLASTP svg
NC_006155:2084669*2084669210379619128Yersinia pseudotuberculosis IP 32953, complete genome5e-51210BLASTN svgBLASTP svg
NC_015224:2095816*2095816211873722922Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-32149BLASTN svgBLASTP svg
NC_020064:1854589*1854589187841223824Serratia marcescens FGI94, complete genome1e-20109BLASTN svgBLASTP svg
NC_015566:1941407*1941407196269221286Serratia sp. AS12 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_012912:1701231*1701231174963148401Dickeya zeae Ech1591, complete genome8e-19103BLASTN svgBLASTP svg
NC_014228:1712339*1712339175523642898Xenorhabdus nematophila ATCC 19061, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_013592:80428880428883459430307Dickeya dadantii Ech586, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_006511:27184012718401273705118651Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-1179.8BLASTN svgBLASTP svg
NC_020260:31280531280533684424040Cronobacter sakazakii Sp291, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_012917:29717022971702299359921898Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004547:3207776*3207776324611038335Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012779:21275422127542216530837767Edwardsiella ictaluri 93-146, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012917:3565268*3565268359123425967Pectobacterium carotovorum subsp. carotovorum PC1, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014562:2871765*2871765290090029136Pantoea vagans C9-1 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_020063:4127161*4127161415360026440Enterobacteriaceae bacterium strain FGI 57, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_011080:28704282870428289413023703Salmonella enterica subsp. enterica serovar Newport str. SL254,7e-0763.9BLASTN svgBLASTP svg
NC_006511:26779642677964270110823145Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC7e-0763.9BLASTN svgBLASTP svg
NC_003198:44534574453457450773054274Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-0763.9BLASTN svgBLASTP svg
NC_015731:2460248*2460248249421233965Nitrosomonas sp. Is79A3 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014837:1570500*1570500160135230853Pantoea sp. At-9b chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg