Pre_GI: BLASTN Hits

Some Help

Query: NC_004347:3028000 Shewanella oneidensis MR-1, complete genome

Start: 3028000, End: 3050217, Length: 22218

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009831:20458112045811206913323323Shewanella sediminis HAW-EB3, complete genome4e-113416BLASTN svgBLASTP svg
NC_009052:18999541899954192338923436Shewanella baltica OS155, complete genome3e-46194BLASTN svgBLASTP svg
NC_009801:995396995396101946824073Escherichia coli E24377A, complete genome1e-42182BLASTN svgBLASTP svg
NC_007712:16014991601499163292631428Sodalis glossinidius str. 'morsitans', complete genome8e-25123BLASTN svgBLASTP svg
NC_002695:3994970*3994970401809923130Escherichia coli O157:H7 str. Sakai, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_013716:24763342476334249822421891Citrobacter rodentium ICC168, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_004741:3240909*3240909326236621458Shigella flexneri 2a str. 2457T, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_004337:32497913249791327283723047Shigella flexneri 2a str. 301, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_000913:3256307*3256307327821621910Escherichia coli K12, complete genome7e-1383.8BLASTN svgBLASTP svg
CU928160:3344746*3344746336309918354Escherichia coli IAI1 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
CU928145:3608917*3608917363276823852Escherichia coli 55989 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
CP002516:613462*61346263169018229Escherichia coli KO11, complete genome7e-1383.8BLASTN svgBLASTP svg
CP002185:3475991*3475991350005224062Escherichia coli W, complete genome7e-1383.8BLASTN svgBLASTP svg
AC_000091:3258377*3258377328148023104Escherichia coli W3110 DNA, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_007613:29818292981829300438522557Shigella boydii Sb227, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_008258:32247213224721324719422474Shigella flexneri 5 str. 8401, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_011751:37107863710786373513424349Escherichia coli UMN026 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_011750:3768692*3768692379303824347Escherichia coli IAI39 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_011748:3608917*3608917363276823852Escherichia coli 55989, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010658:3014371*3014371303259918229Shigella boydii CDC 3083-94, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010473:3354052*3354052337759923548Escherichia coli str. K-12 substr. DH10B, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010468:61381261381263388120070Escherichia coli ATCC 8739, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_009801:35950013595001361359918599Escherichia coli E24377A, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_009800:3307123*3307123332547318351Escherichia coli HS, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_002516:89100089100091357122572Pseudomonas aeruginosa PAO1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_011770:49241274924127497209947973Pseudomonas aeruginosa LESB58, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015275:1223088*1223088124719524108Clostridium lentocellum DSM 5427 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013961:24411482441148246091119764Erwinia amylovora, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007712:28970002897000291516418165Sodalis glossinidius str. 'morsitans', complete genome2e-1075.8BLASTN svgBLASTP svg
NC_012214:14384761438476146005421579Erwinia pyrifoliae Ep1/96, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_012912:1200000*1200000122694026941Dickeya zeae Ech1591, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010498:34885133488513350850119989Escherichia coli SMS-3-5, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010159:1668795*1668795168827719483Yersinia pestis Angola, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009446:473960*47396049851424555Dichelobacter nodosus VCS1703A, complete genome2e-0765.9BLASTN svgBLASTP svg