Pre_GI: BLASTN Hits

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Query: NC_003063:304962 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 304962, End: 334283, Length: 29322

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003305:17439391743939177259928661Agrobacterium tumefaciens str. C58 chromosome linear, complete050780BLASTN svgBLASTP svg
NC_003063:20593112059311208899929689Agrobacterium tumefaciens str. C58 chromosome linear, complete02545BLASTN svgBLASTP svg
NC_003064:22535225354830925775Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence01352BLASTN svgBLASTP svg
NC_003306:22228222284809925872Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence01352BLASTN svgBLASTP svg
NC_003047:33600003360000341859958600Sinorhizobium meliloti 1021, complete genome2e-78301BLASTN svgBLASTP svg
NC_009720:39681013968101399101722917Xanthobacter autotrophicus Py2, complete genome3e-37165BLASTN svgBLASTP svg
NC_007925:42944724294472431768023209Rhodopseudomonas palustris BisB18, complete genome5e-36161BLASTN svgBLASTP svg
NC_014816:24462362446236249509148856Asticcacaulis excentricus CB 48 chromosome 1, complete sequence7e-23117BLASTN svgBLASTP svg
NC_015684:31579413157941318409926159Oligotropha carboxidovorans OM5 chromosome, complete genome3e-22115BLASTN svgBLASTP svg
NC_015556:41183044118304414271224409Pseudomonas fulva 12-X chromosome, complete genome3e-22115BLASTN svgBLASTP svg
NC_011386:93114093114096230731168Oligotropha carboxidovorans OM5, complete genome3e-22115BLASTN svgBLASTP svg
NC_002696:2941644*2941644296461322970Caulobacter crescentus CB15, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_009720:44069914406991444791640926Xanthobacter autotrophicus Py2, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_008260:10154471015447103954324097Alcanivorax borkumensis SK2, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_021150:15642291564229159503430806Azotobacter vinelandii CA6, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_012560:15645001564500159380029301Azotobacter vinelandii DJ, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_019673:8799533*8799533883442634894Saccharothrix espanaensis DSM 44229 complete genome2e-1489.7BLASTN svgBLASTP svg
NC_010170:4800000*48000004908823108824Bordetella petrii, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_008358:79839079839083934340954Hyphomonas neptunium ATCC 15444, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007492:45639814563981458949625516Pseudomonas fluorescens PfO-1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004463:16830001683000171788734888Bradyrhizobium japonicum USDA 110, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_008048:38964538964542759937955Sphingopyxis alaskensis RB2256, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_008340:2614000*2614000263940025401Alkalilimnicola ehrlichei MLHE-1, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_012917:43284634328463435209923637Pectobacterium carotovorum subsp. carotovorum PC1, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_012791:82137182137185170230332Variovorax paradoxus S110 chromosome 1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007722:21720002172000219518323184Erythrobacter litoralis HTCC2594, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007722:16893716893719928730351Erythrobacter litoralis HTCC2594, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007958:830000*83000086140231403Rhodopseudomonas palustris BisB5, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_007005:10362431036243106363927397Pseudomonas syringae pv. syringae B728a, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_001264:28266282666040532140Deinococcus radiodurans R1 chromosome 2, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_007626:959684*959684100429644613Magnetospirillum magneticum AMB-1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011887:11061811061813688826271Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete2e-1075.8BLASTN svgBLASTP svg
NC_014562:20499212049921207971629796Pantoea vagans C9-1 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_005085:43353334335333437106535733Chromobacterium violaceum ATCC 12472, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_005125:48050048050051032729828Gloeobacter violaceus PCC 7421, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_007298:13348761334876136112026245Dechloromonas aromatica RCB, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_008390:81857181857184350924939Burkholderia cepacia AMMD chromosome 1, complete sequence4e-0971.9BLASTN svgBLASTP svg
NC_010515:11242981124298115292928632Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence4e-0971.9BLASTN svgBLASTP svg
NC_015954:10514401051440107644325004Halophilic archaeon DL31 chromosome, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_006348:20717492071749209535023602Burkholderia mallei ATCC 23344 chromosome 1, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_006350:31951653195165321400518841Burkholderia pseudomallei K96243 chromosome 1, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_007434:34529853452985347302220038Burkholderia pseudomallei 1710b chromosome I, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_007626:10910001091000111043819439Magnetospirillum magneticum AMB-1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008570:3220539*3220539328055660018Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008785:91441191441194029125881Burkholderia mallei SAVP1 chromosome II, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_008836:27803392780339280541925081Burkholderia mallei NCTC 10229 chromosome II, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_015947:56812456812459380225679Burkholderia sp. JV3 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014375:1146328*1146328117709930772Brevundimonas subvibrioides ATCC 15264 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009080:18157681815768183436818601Burkholderia mallei NCTC 10247 chromosome II, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_009076:30451393045139306397918841Burkholderia pseudomallei 1106a chromosome I, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_009074:30297163029716304855618841Burkholderia pseudomallei 668 chromosome I, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_004369:24654612465461248656121101Corynebacterium efficiens YS-314, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_008343:88184*8818411285024667Granulibacter bethesdensis CGDNIH1, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_009648:26997392699739273776838030Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_010338:4530403*4530403455419223790Caulobacter sp. K31, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_010501:15189591518959154333524377Pseudomonas putida W619, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_010551:84695384695386809921147Burkholderia ambifaria MC40-6 chromosome 1, complete sequence6e-0867.9BLASTN svgBLASTP svg
NC_014500:14916601491660151533923680Dickeya dadantii 3937 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_015424:16895001689500172544435945Aeromonas veronii B565 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_020064:15475241547524158410636583Serratia marcescens FGI94, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_002678:62320006232000625909927100Mesorhizobium loti MAFF303099, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007762:889798897911484025862Rhizobium etli CFN 42 plasmid p42a, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_008209:25366325366327713323471Roseobacter denitrificans OCh 114, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011894:43605774360577439709936523Methylobacterium nodulans ORS 2060, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012880:13550813550816052825021Dickeya dadantii Ech703, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_019973:50694995069499509210422606Mesorhizobium australicum WSM2073, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020209:5077410*5077410511615938750Pseudomonas poae RE*1-1-14, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005773:11353741135374117481539442Pseudomonas syringae pv. phaseolicola 1448A, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_006513:88112088112091309931980Azoarcus sp. EbN1, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_007516:18477451847745186809920355Synechococcus sp. CC9605, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_007948:46206614620661464325222592Polaromonas sp. JS666, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_010501:54420005442000546540823409Pseudomonas putida W619, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_015856:940625*94062598805147427Collimonas fungivorans Ter331 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_016002:3704006*3704006373059326588Pseudogulbenkiania sp. NH8B, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_019940:33417943341794336057818785Thioflavicoccus mobilis 8321 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_004463:17490001749000176859919600Bradyrhizobium japonicum USDA 110, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004663:2509433*2509433256562156189Bacteroides thetaiotaomicron VPI-5482, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005070:61744861744864381626369Synechococcus sp. WH 8102, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007651:16625581662558168442221865Burkholderia thailandensis E264 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_007951:74050074050076287822379Burkholderia xenovorans LB400 chromosome 1, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_009439:63719363719366076223570Pseudomonas mendocina ymp, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009800:21560912156091218719031100Escherichia coli HS, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011891:49319614931961494959917639Anaeromyxobacter dehalogenans 2CP-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013961:2260250*2260250228983729588Erwinia amylovora, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014958:31311913131191315796026770Deinococcus maricopensis DSM 21211 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015733:1555476*1555476160259947124Pseudomonas putida S16 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002947:19886521988652202146032809Pseudomonas putida KT2440, complete genome3e-0661.9BLASTN svgBLASTP svg