Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:637193 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6371936382361044lipopolysaccharide heptosyltransferase IIQuickGO ontologyBLASTP
6382386392421005lipopolysaccharide heptosyltransferase IQuickGO ontologyBLASTP
6392526403761125glycosyl transferase group 1QuickGO ontologyBLASTP
640382641179798lipopolysaccharide kinaseQuickGO ontologyBLASTP
641179641913735lipopolysaccharide kinaseQuickGO ontologyBLASTP
641910642653744lipopolysaccharide kinaseQuickGO ontologyBLASTP
6426536440981446hypothetical proteinBLASTP
6441116458651755carbamoyltransferaseQuickGO ontologyBLASTP
6458526469701119glycosyl transferase group 1QuickGO ontologyBLASTP
647007647879873hypothetical proteinBLASTP
6478826490271146glycosyl transferase group 1QuickGO ontologyBLASTP
649024649908885glycosyl transferase family proteinQuickGO ontologyBLASTP
649911650567657acetyltransferaseQuickGO ontologyBLASTP
6524936543341842lipid A ABC exporter fused ATPase and inner membrane subunits MsbAQuickGO ontologyBLASTP
654334655230897Mig-14 family proteinQuickGO ontologyBLASTP
6552356566231389LmbE family proteinQuickGO ontologyBLASTP
6566856581061422bifunctional heptose 7-phosphate kinaseheptose 1-phosphate adenyltransferaseQuickGO ontologyBLASTP
6582576595371281acyl-CoA dehydrogenase domain-containing proteinQuickGO ontologyBLASTP
6595516607621212acyl-CoA dehydrogenase domain-containing proteinQuickGO ontologyBLASTP