Pre_GI: BLASTP Hits

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Query: NC_009439:637193:644111 Pseudomonas mendocina ymp, complete genome

Start: 644111, End: 645865, Length: 1755

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:709947:7125347125347142881755Pseudomonas mendocina NK-01 chromosome, complete genomecarbamoyltransferase01192
NC_015740:4072415:4084514408451440862681755Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completecarbamoyl transferase01159
NC_009434:4140362:4155643415564341573971755Pseudomonas stutzeri A1501, complete genomecarbamoyl transferase01134
NC_015556:4543380:4564874456487445666251752Pseudomonas fulva 12-X chromosome, complete genomeCarbamoyltransferase01114
NC_007947:797456:7974567974567991741719Methylobacillus flagellatus KT, complete genomeCarbamoyltransferase0850
NC_008508:1382036:1385696138569613874471752Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,Carbamoyl transferase4e-95349
NC_008510:1339926:1343577134357713453281752Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,Carbamoyl transferase4e-95349
NC_018868:1960542:2004094200409420057851692Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomecarbamoyltransferase2e-81303
NC_000914:135534:1519791519791540212043Rhizobium sp. NGR234 plasmid pNGR234a, complete sequenceNolO6e-81302
NC_014537:1454618:1468715146871514705171803Vulcanisaeta distributa DSM 14429 chromosome, complete genomecarbamoyltransferase5e-78292
NC_007434:2386036:2386036238603623877571722Burkholderia pseudomallei 1710b chromosome I, complete sequenceputative carbamoyl transferase4e-77289
NC_015675:6615245:6625521662552166275662046Mesorhizobium opportunistum WSM2075 chromosome, complete genomecarbamoyltransferase2e-76287
NC_014923:6060859:6070853607085360728982046Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeCarbamoyltransferase2e-76287
NC_019973:5989816:5999810599981060018552046Mesorhizobium australicum WSM2073, complete genomeputative carbamoyl transferase, NodU family2e-76287
NC_008817:1476473:1508931150893115107841854Prochlorococcus marinus str. MIT 9515, complete genomeCarbamoyltransferase2e-75283
NC_009840:1485383:1548808154880815506761869Prochlorococcus marinus str. MIT 9215, complete genomeCarbamoyltransferase6e-75282
NC_016609:4209000:4216992421699242187521761Niastella koreensis GR20-10 chromosome, complete genomeCarbamoyltransferase4e-74279
NC_012721:1635999:1648683164868316504461764Burkholderia glumae BGR1 chromosome 2, complete genomeCarbamoyltransferase2e-73276
NC_014722:1971305:1977363197736319790541692Burkholderia rhizoxinica HKI 454, complete genomeCARBAMOYL TRANSFERASE4e-72272
NC_014841:131308:1416071416071434391833Pantoea sp. At-9b plasmid pPAT9B04, complete sequenceCarbamoyltransferase2e-70267
NC_016815:1085462:1106364110636411081961833Sinorhizobium fredii HH103 plasmid pSfHH103e complete sequenceputative carbamoyltransferase5e-70265
NC_012883:695652:7094267094267110271602Thermococcus sibiricus MM 739, complete genomeCarbamoyl transferase, NodU family1e-69264
NC_012880:3529017:3554574355457435566462073Dickeya dadantii Ech703, complete genomeCarbamoyltransferase1e-68261
NC_016109:3591401:3635770363577036374971728Kitasatospora setae KM-6054, complete genomeputative carbamoyltransferase8e-69261
NC_014228:3353896:3378037337803733798811845Xenorhabdus nematophila ATCC 19061, complete genomeputative carbamoyltransferase protein3e-66253
NC_008278:5053899:5082412508241250842591848Frankia alni ACN14a, complete genomeCarbamoyl transferase of the NodU/CmcH family4e-64246
NC_004463:2158116:2191519219151921931651647Bradyrhizobium japonicum USDA 110, complete genomeNolO protein2e-63244
NC_017249:7993713:8084817808481780864391623Bradyrhizobium japonicum USDA 6, complete genomeNolO protein3e-60233
NC_015138:1016000:1021711102171110234891779Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completecarbamoyltransferase6e-59228
NC_013093:3791912:3813054381305438150632010Actinosynnema mirum DSM 43827, complete genomeCarbamoyltransferase8e-58225
NC_013722:1689125:1740869174086917426231755Xanthomonas albilineans, complete genomeputative carbamoyltransferase;albicidin synthetase protein2e-56221
NC_014010:1020488:1041653104165310434281776Candidatus Puniceispirillum marinum IMCC1322 chromosome, completepredicted carbamoyl transferase, NodU family2e-55217
NC_015224:647341:6531426531426548421701Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative transferase4e-55216
NC_008800:614850:6206546206546223631710Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative transferase7e-54212
NC_007645:2408125:2442115244211524438721758Hahella chejuensis KCTC 2396, complete genomepredicted carbamoyl transferase, NodU family3e-53210
NC_009635:1067334:1085757108575710873341578Methanococcus aeolicus Nankai-3 chromosome, complete genomecarbamoyltransferase1e-51204
NC_014355:844248:8539708539708557541785Candidatus Nitrospira defluvii, complete genomeputative carbamoyltransferase4e-48192
NC_008510:1339926:1340548134054813423471800Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,Carbamoyl transferase1e-45184
NC_008508:1382036:1382667138266713844661800Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,Carbamoyl transferase1e-45184
NC_000909:963984:9879469879469894871542Methanocaldococcus jannaschii DSM 2661, complete genomenodulation protein2e-44181
NC_013592:1056500:1066104106610410691213018Dickeya dadantii Ech586, complete genomeCarbamoyltransferase7e-44179
NC_016111:3052494:3054439305443930561541716Streptomyces cattleya NRRL 8057, complete genomeCarbamoyltransferase2e-42174
NC_013592:3397304:3408677340867734103831707Dickeya dadantii Ech586, complete genomeCarbamoyltransferase7e-41169
NC_014718:102852:1100091100091110401032Burkholderia rhizoxinica HKI 454 chromosome, complete genomeCARBAMOYL TRANSFERASE2e-40167
NC_021177:3627947:3632059363205936337831725Streptomyces fulvissimus DSM 40593, complete genomeputative carbamoyl transferase, NodU family1e-38162
NC_014391:4617688:4631253463125346329561704Micromonospora aurantiaca ATCC 27029 chromosome, complete genomecarbamoyltransferase2e-38160
NC_009832:3703202:3711485371148537134551971Serratia proteamaculans 568, complete genomeCarbamoyltransferase3e-35150
NC_010529:296500:3029123029123046331722Cupriavidus taiwanensis plasmid pRALTA, complete sequenceNodU Carbamoyltransferase5e-34146
NC_017249:7993713:8088813808881380905221710Bradyrhizobium japonicum USDA 6, complete genome6-O-carbamoyl transferase6e-34145
NC_008820:1766973:177796717779671778770804Prochlorococcus marinus str. MIT 9303, complete genomehypothetical protein2e-33144
NC_004463:2158116:2187460218746021891691710Bradyrhizobium japonicum USDA 110, complete genome6-O-carbamoyl transferase2e-33144
NC_010627:463646:4834934834934852111719Burkholderia phymatum STM815 plasmid pBPHY02, complete sequenceCarbamoyltransferase3e-33143
NC_008726:610000:619453619453620250798Mycobacterium vanbaalenii PYR-1, complete genome3e-33143
NC_013440:3977097:3996780399678039983481569Haliangium ochraceum DSM 14365, complete genomeCarbamoyltransferase1e-32142
NC_009937:4350132:4367692436769243693741683Azorhizobium caulinodans ORS 571, complete genomenodulation protein U9e-29129
NC_014815:4385759:4396419439641943980891671Micromonospora sp. L5 chromosome, complete genomecarbamoyltransferase9e-29128
NC_014311:2831620:2841992284199228435961605Ralstonia solanacearum PSI07 chromosome, complete genome3'-hydroxymethylcephem-O-carbamoyltransferase3e-27124
NC_007908:4069150:4078563407856340802541692Rhodoferax ferrireducens T118, complete genomeCarbamoyltransferase3e-26120
NC_009255:1890112:190459719045971905115519Burkholderia vietnamiensis G4 chromosome 2, complete sequence8e-23108
NC_009921:1668306:171431217143121714608297Frankia sp. EAN1pec, complete genomecarbamoyltransferase6e-1582.8
NC_007677:241846:282002282002282568567Salinibacter ruber DSM 13855, complete genomecarbamoyltransferase family1e-1482
NC_004463:2158116:219112721911272191522396Bradyrhizobium japonicum USDA 110, complete genomeNolN protein4e-0757
NC_017249:7993713:808646080864608086843384Bradyrhizobium japonicum USDA 6, complete genomeNolN protein4e-0757