Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:2156091 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
21560912156588498IS1 transposase orfBQuickGO ontologyBLASTP
21565072156782276IS1 transposase orfAQuickGO ontologyBLASTP
215684021580061167UDP-glucose 6-dehydrogenaseQuickGO ontologyBLASTP
21581872158741555dTDP-4-dehydrorhamnose 35-epimeraseQuickGO ontologyBLASTP
21587562159646891dTDP-4-dehydrorhamnose reductaseQuickGO ontologyBLASTP
21596782160547870glucose-1-phosphate thymidylyltransferaseQuickGO ontologyBLASTP
216057421616381065dTDP-glucose 46-dehydrataseQuickGO ontologyBLASTP
2161862216326814076-phosphogluconate dehydrogenase decarboxylatingQuickGO ontologyBLASTP
216346921648991431putative polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
21649822165833852hypothetical proteinBLASTP
216582621670761251hypothetical proteinBLASTP
21670782167848771glycosyl transferase group 2 family proteinQuickGO ontologyBLASTP
216788021696731794hypothetical protein
21701202171031912glycosyl transferase group 2 family proteinQuickGO ontologyBLASTP
217106921724961428bacterial sugar transferaseQuickGO ontologyBLASTP
217259921747672169tyrosine-protein kinase etkQuickGO ontologyBLASTP
21747822175219438low molecular weight phosphotyrosine protein phosphataseQuickGO ontologyBLASTP
217522121763571137polysaccharide biosynthesisexport proteinQuickGO ontologyBLASTP
217650121780151515hypothetical proteinBLASTP
21781472178287141hypothetical protein
21782622178363102hypothetical protein
21785082178783276IS1 transposase orfAQuickGO ontologyBLASTP
21787022179205504IS1 transposase orfBQuickGO ontologyBLASTP
21793022179538237hypothetical proteinBLASTP
21803152181217903regulatory protein GalFQuickGO ontologyBLASTP
218400121858541854AsmA proteinQuickGO ontologyBLASTP
21858762186457582deoxycytidine triphosphate deaminaseQuickGO ontologyBLASTP
21865492187190642uridine kinaseQuickGO ontologyBLASTP