Pre_GI: BLASTP Hits

Some Help

Query: NC_017179:1683199:1696029 Clostridium difficile BI1, complete genome

Start: 1696029, End: 1698446, Length: 2418

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:1679000:1688014168801416904312418Clostridium difficile CD196 chromosome, complete genomevirulence-associated protein e01600
NC_012563:2680246:2683948268394826863712424Clostridium botulinum A2 str. Kyoto, complete genomevirulence-associated E domain protein01142
NC_017297:2531750:2556138255613825585612424Clostridium botulinum F str. 230613 chromosome, complete genomeputative virulence-associated protein E01129
NC_009699:2552195:2555998255599825584212424Clostridium botulinum F str. Langeland chromosome, complete genomevirulence-associated protein E01129
NC_017190:3166000:3168463316846331708772415Bacillus amyloliquefaciens LL3 chromosome, complete genomehypothetical protein0916
NC_004668:295417:3020153020153044532439Enterococcus faecalis V583, complete genomehypothetical protein0823
NC_011660:2541632:2567732256773225701702439Listeria monocytogenes HCC23 chromosome, complete genomevirulence-associated E family protein0813
NC_009253:1265474:1272083127208312745392457Desulfotomaculum reducens MI-1 chromosome, complete genomevirulence-associated E family protein0803
NC_017337:321155:3371193371193395662448Staphylococcus aureus subsp. aureus ED133 chromosome, completevirulence-associated protein E0773
NC_017338:1517723:1542429154242915448762448Staphylococcus aureus subsp. aureus JKD6159 chromosome, completevirulence-associated E family protein0770
NC_007793:1574456:1575087157508715775342448Staphylococcus aureus subsp. aureus USA300, complete genomevirulence-associated protein E0770
NC_010079:1564327:1589034158903415914812448Staphylococcus aureus subsp. aureus USA300_TCH1516, completehypothetical bacteriophage protein0770
NC_002952:1592000:1618968161896816214152448Staphylococcus aureus subsp. aureus MRSA252, complete genomehypothetical protein0769
NC_015519:2526047:2529737252973725321422406Tepidanaerobacter sp. Re1 chromosome, complete genomevirulence-associated E family protein0768
NC_014219:3254268:3254268325426832566912424Bacillus selenitireducens MLS10 chromosome, complete genomevirulence-associated E family protein0758
NC_007168:1839382:1841834184183418442812448Staphylococcus haemolyticus JCSC1435, complete genomehypothetical protein0755
NC_009706:2673906:2728959272895927313252367Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein0737
NC_011898:3367457:3402258340225834046242367Clostridium cellulolyticum H10, complete genomevirulence-associated E family protein0728
NC_003909:386880:4009774009774033432367Bacillus cereus ATCC 10987, complete genomevirulence-associated protein E0723
NC_010320:1268355:1278305127830512806502346Thermoanaerobacter sp. X514 chromosome, complete genomevirulence-associated E family protein0713
NC_014393:937000:9445859445859469572373Clostridium cellulovorans 743B chromosome, complete genomevirulence-associated E family protein0706
NC_014328:303063:3567403567403591032364Clostridium ljungdahlii ATCC 49587 chromosome, complete genomephage-like protein0705
NC_015520:2974048:2996411299641129987982388Mahella australiensis 50-1 BON chromosome, complete genomevirulence-associated E family protein0697
NC_017294:115500:1241791241791266742496Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomevirulence-associated E family protein0667
NC_021182:554000:5655985655985680182421Clostridium pasteurianum BC1, complete genomeputative P-loop ATPase0645
NC_017317:1291294:1305808130580813082672460Corynebacterium ulcerans 809 chromosome, complete genomevirulence-associated E family protein2e-176620
NC_015683:1296000:1309435130943513118942460Corynebacterium ulcerans BR-AD22 chromosome, complete genomevirulence-associated E family protein1e-175617
NC_013517:1480368:1491811149181114942312421Sebaldella termitidis ATCC 33386, complete genomevirulence-associated E family protein2e-173609
NC_010337:2848360:2888069288806928904562388Heliobacterium modesticaldum Ice1, complete genomevirulence-associated protein e, putative3e-173608
NC_009633:4097536:4132929413292941352772349Alkaliphilus metalliredigens QYMF chromosome, complete genomevirulence-associated E family protein5e-161568
NC_016633:3069518:3106570310657031090082439Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeputative P-loop ATPase1e-159564
NC_014219:830966:8534298534298557802352Bacillus selenitireducens MLS10 chromosome, complete genomevirulence-associated E family protein4e-154545
NC_018704:1424728:1429086142908614309091824Amphibacillus xylanus NBRC 15112, complete genomehypothetical protein2e-135483
NC_008021:1401249:1408472140847214108562385Streptococcus pyogenes MGAS9429, complete genomeDNA primase4e-102373
NC_007297:1406796:1414019141401914164032385Streptococcus pyogenes MGAS5005, complete genomeDNA primase4e-102373
NC_008023:1426687:1432362143236214347462385Streptococcus pyogenes MGAS2096, complete genomeDNA primase4e-102373
NC_012471:2080902:2093767209376720961512385Streptococcus equi subsp. equi 4047, complete genomephage DNA primase/helicase protein3e-101370
NC_009332:1050353:1058083105808310604672385Streptococcus pyogenes str. Manfredo chromosome, complete genomephage DNA primase/helicase protein3e-101370
NC_011375:749693:7590757590757614592385Streptococcus pyogenes NZ131 chromosome, complete genomeDNA primase/helicase-phage associated3e-101370
NC_004070:1431146:1438856143885614412402385Streptococcus pyogenes MGAS315, complete genomeputative DNA primase/helicase - phage associated2e-101370
NC_004606:446427:4556454556454580292385Streptococcus pyogenes SSI-1, complete genomeputative DNA primase (phage associated)2e-101370
NC_006086:35599:4481744817472012385Streptococcus pyogenes MGAS10394, complete genomevirulence-associated protein E2e-101370
NC_016048:4047922:4065621406562140679632343Oscillibacter valericigenes Sjm18-20, complete genomevirulence-associated E family protein4e-99362
NC_015558:905227:9146429146429170382397Streptococcus parauberis KCTC 11537 chromosome, complete genomeDNA primase/helicase protein8e-98358
NC_015913:117966:1248621248621273642503Candidatus Arthromitus sp. SFB-mouse-Japan, complete genome6e-95349
NC_017347:2119000:2128469212846921299261458Staphylococcus aureus subsp. aureus T0131 chromosome, completePathogenicity island protein8e-78292
NC_017341:903473:9104009104009118571458Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,pathogenicity island protein8e-78292
NC_015976:1893076:1921264192126419237532490Sphingobium sp. SYK-6, complete genomehypothetical protein1e-59231
NC_012781:2552723:2576194257619425775221329Eubacterium rectale ATCC 33656, complete genomehypothetical protein3e-56220
NC_012781:700226:7212377212377225651329Eubacterium rectale ATCC 33656, complete genomehypothetical protein3e-56220
NC_013316:2033906:2084201208420120855291329Clostridium difficile R20291, complete genomehypothetical protein1e-55218
NC_011420:36272:3838538385409132529Rhodospirillum centenum SW, complete genomevirulence-associated protein E, putative3e-53211
NC_004578:3849835:3854392385439238566112220Pseudomonas syringae pv. tomato str. DC3000, complete genomeDNA primase domain protein7e-53209
NC_020126:4084114:4102816410281641051162301Myxococcus stipitatus DSM 14675, complete genomevirulence-associated protein E domain-containing protein2e-50201
NC_002947:3404000:3421840342184034240502211Pseudomonas putida KT2440, complete genomepyocin R2_PP, traC domain protein2e-50201
NC_016830:5031819:5038640503864050408592220Pseudomonas fluorescens F113 chromosome, complete genomevirulence-associated e family protein2e-50201
NC_017986:5509569:5526345552634555285552211Pseudomonas putida ND6 chromosome, complete genomeTraC domain-containing protein3e-50200
NC_004129:2201780:2215930221593022181672238Pseudomonas fluorescens Pf-5, complete genomeDNA primase domain protein2e-48194
NC_004463:5540924:5563519556351955647331215Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein3e-46187
NC_013316:2033906:2064800206480020661581359Clostridium difficile R20291, complete genomehypothetical protein3e-45184
NC_012724:3100430:3107328310732831098292502Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein4e-45183
NC_014623:1074299:1107875110787511101812307Stigmatella aurantiaca DW4/3-1 chromosome, complete genomevirulence-associated protein e2e-44181
NC_008095:1401919:1418714141871414213262613Myxococcus xanthus DK 1622, complete genomevirulence-associated protein E domain protein2e-44181
NC_008390:2058500:2059577205957720620842508Burkholderia cepacia AMMD chromosome 1, complete sequencevirulence-associated E family protein3e-43177
NC_015381:1173603:1192541119254111952732733Burkholderia gladioli BSR3 chromosome 1, complete sequencepyocin R2_PP, TraC domain-containing protein2e-43177
NC_014923:3968000:3977192397719239786101419Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completevirulence-associated E family protein2e-42174
NC_012471:781063:7934387934387948381401Streptococcus equi subsp. equi 4047, complete genomephage protein5e-41169
NC_015913:1248000:125824112582411258720480Candidatus Arthromitus sp. SFB-mouse-Japan, complete genome2e-39164
NC_012984:520000:5261575261575274311275Lactobacillus plantarum JDM1, complete genomeprophage Lp3 protein 8, helicase4e-39163
NC_009485:5171658:5180072518007251822822211Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein2e-38161
NC_005125:4093352:4095492409549240980112520Gloeobacter violaceus PCC 7421, complete genomehypothetical protein6e-37156
NC_005070:1088808:1092275109227510943412067Synechococcus sp. WH 8102, complete genomehypothetical protein3e-29131
NC_007413:3168931:3176621317662131787142094Anabaena variabilis ATCC 29413, complete genomeVirulence-associated E8e-29129
NC_013941:3182576:3187690318769031898762187Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeP-loop ATPase-like protein2e-28128
NC_007513:1388641:1393386139338613945881203Synechococcus sp. CC9902, complete genomeP-loop ATPase and inactivated derivatives-like1e-25118
NC_011001:2085986:2094115209411520955031389Burkholderia cenocepacia J2315 chromosome 2, complete sequencehypothetical protein8e-25116
NC_011296:281930:2861472861472873611215Thermodesulfovibrio yellowstonii DSM 11347, complete genomepyocin R2_PP, TraC domain protein8e-25116
NC_010628:7493599:7499132749913275014172286Nostoc punctiforme PCC 73102, complete genomevirulence-associated E family protein7e-24113
NC_014752:131994:1422961422961441431848Neisseria lactamica ST-640, complete genomehypothetical protein1e-23112
NC_005070:334952:3501023501023520721971Synechococcus sp. WH 8102, complete genomehypothetical protein3e-1791.3
NC_016776:4115889:4127533412753341296922160Bacteroides fragilis 638R, complete genomehypothetical protein8e-1583.2
NC_014655:1098428:1106577110657711087512175Leadbetterella byssophila DSM 17132 chromosome, complete genomevirulence-associated e family protein1e-1275.5
NC_020054:1666263:1680500168050016817261227Fibrella aestuarina BUZ 2 drat genomehypothetical protein2e-1275.1
NC_013730:3956457:3966105396610539683512247Spirosoma linguale DSM 74, complete genomeP-loop ATPase and inactivated derivatives-like protein2e-1172
NC_021184:4524500:453192545319254532161237Desulfotomaculum gibsoniae DSM 7213, complete genomehypothetical protein2e-1171.6
NC_013730:6471484:6495471649547164977202250Spirosoma linguale DSM 74, complete genomeP-loop ATPase and inactivated derivatives-like protein6e-1170.5
NC_007516:891681:907360907360907800441Synechococcus sp. CC9605, complete genome8e-1169.7
NC_016613:1805907:1805907180590718083722466Vibrio sp. EJY3 chromosome 1, complete sequencehypothetical protein2e-1068.6
NC_007516:891681:898829898829899485657Synechococcus sp. CC9605, complete genomehypothetical protein5e-1067.4
NC_014033:1564733:1576067157606715781812115Prevotella ruminicola 23 chromosome, complete genomehypothetical protein2e-0964.7
NC_014033:675626:6786476786476798581212Prevotella ruminicola 23 chromosome, complete genomehypothetical protein3e-0964.3
NC_009615:1734752:1764735176473517668912157Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein3e-0861.2
NC_017347:2119000:212994321299432130812870Staphylococcus aureus subsp. aureus T0131 chromosome, completePathogenicity island protein3e-0861.2
NC_017341:903473:909514909514910383870Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,putative phage primase3e-0861.2
NC_018606:40000:4485844858463451488Cardinium endosymbiont cPer1 of Encarsia pergandiella plasmidVirulence-associated E family protein6e-0860.1
NC_007973:2888824:2896361289636128982591899Ralstonia metallidurans CH34 chromosome 1, complete sequencePhage/plasmid primase P4-like protein2e-0758.5
NC_015942:1047576:106463510646351065573939Acidithiobacillus ferrivorans SS3 chromosome, complete genomehypothetical protein4e-0757.4
NC_019960:1658657:1736006173600617373071302Prevotella dentalis DSM 3688 chromosome 1, complete sequenceputative P-loop ATPase1e-0655.5
NC_011365:592256:6017116017116033421632Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomehypothetical protein3e-0654.7
NC_015311:2626850:2659600265960026610361437Prevotella denticola F0289 chromosome, complete genomeVirulence-associated protein E3e-0654.7
NC_019960:1126000:1133465113346511346551191Prevotella dentalis DSM 3688 chromosome 1, complete sequenceputative P-loop ATPase5e-0653.9