Pre_GI Gene

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Host: NC_021182 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_021182:554000 Clostridium pasteurianum BC1, complete genome

Host Lineage: Clostridium pasteurianum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Environment: Soil; Isolation: Coal-cleaning residues; Temp: Mesophile; Temp: 30C. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium pasteurianum was first isolated from soil by the Russian microbiologist Sergey Winogradsky. This organism is able to fix nitrogen and oxidize hydrogen into protons. The genes involved in nitrogen fixation and hydrogen oxidation have been extensively studied in this organism.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5551545563141161site-specific recombinase XerDQuickGO ontologyBLASTP
556374557291918SOS response transcriptional repressor RecA-mediated autopeptidaseQuickGO ontologyBLASTP
557520557753234putative transcriptional regulatorQuickGO ontologyBLASTP
5577675588221056prophage antirepressorQuickGO ontologyBLASTP
558825559064240hypothetical protein
559103559288186hypothetical proteinBLASTP
559322559444123hypothetical protein
559545559772228hypothetical protein
559787560314528hypothetical proteinBLASTP
5603115614921182Protein of unknown function DUF2800QuickGO ontologyBLASTP
561485562237753Protein of unknown function DUF2815QuickGO ontologyBLASTP
5622345642071974DNA polymerase I family protein with 3-5-exonuclease and polymerase domainsQuickGO ontologyBLASTP
564461565159699aspartate racemaseQuickGO ontologyBLASTP
565303565533231hypothetical proteinBLASTP
5655985680182421putative P-loop ATPaseQuickGO ontologyBLASTP
568311568592282VRR-NUC domain-containing proteinQuickGO ontologyBLASTP
568592568798207hypothetical protein
5688055701751371DNARNA helicase superfamily II SNF2 familyQuickGO ontologyBLASTP
570188570736549hypothetical proteinBLASTP
571398572165768hypothetical proteinBLASTP
5723175736361320phage terminase large subunit PBSX familyQuickGO ontologyBLASTP
5736395751591521Phage portal protein SPP1 Gp6QuickGO ontologyBLASTP
5751625763821221Phage minor capsid protein 2QuickGO ontologyBLASTP
576388576558171hypothetical proteinBLASTP
576559576720162hypothetical protein
576712577416705Nucleoside 2-deoxyribosyltransferaseQuickGO ontologyBLASTP
577559578134576Phage minor structural protein GP20QuickGO ontologyBLASTP
578152579030879hypothetical proteinBLASTP
579042579269228hypothetical protein
579272579631360hypothetical proteinBLASTP
579641579967327hypothetical proteinBLASTP
579967580350384hypothetical proteinBLASTP
580350580736387hypothetical proteinBLASTP
580747581193447hypothetical proteinBLASTP
581207581536330hypothetical proteinBLASTP
581551581868318Bacteriophage Gp15 proteinQuickGO ontologyBLASTP
581920582444525hypothetical protein
5824955858873393hypothetical proteinBLASTP