Pre_GI: BLASTP Hits

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Query: NC_016830:3869572:3909321 Pseudomonas fluorescens F113 chromosome, complete genome

Start: 3909321, End: 3909575, Length: 255

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants. Furthermore a number of strains also posses the ability to suppress agricultural pathogens like fungal infections, hence their role as biocontrol (biological disease control) agents is under examination. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021150:2348214:236470423647042364976273Azotobacter vinelandii CA6, complete genomehistone-like DNA-binding protein2e-1890.9
NC_012560:2348202:236469223646922364964273Azotobacter vinelandii DJ, complete genomehistone-like bacterial DNA-binding protein2e-1890.9
NC_010995:2312901:231914623191462319418273Cellvibrio japonicus Ueda107, complete genomeDNA-binding protein HU superfamily4e-1890.1
NC_007645:2204066:221540322154032215675273Hahella chejuensis KCTC 2396, complete genomeBacterial nucleoid DNA-binding protein4e-1786.7
NC_002947:2589951:263308226330822633354273Pseudomonas putida KT2440, complete genomeDNA-binding protein HU-beta7e-1785.9
NC_004129:4596040:460138246013824601654273Pseudomonas fluorescens Pf-5, complete genomeDNA-binding protein HU, beta subunit9e-1682
NC_008570:2216736:221933122193312219603273Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeDNA-binding protein HU-beta5e-1579.7
NC_007626:2204767:225746522574652257743279Magnetospirillum magneticum AMB-1, complete genomeBacterial nucleoid DNA-binding protein7e-1579.3
NC_016632:1049510:106168310616831061955273Serratia symbiotica str. 'Cinara cedri' chromosome, completehistone family protein DNA-binding protein1e-1478.6
NC_014539:1839840:184259318425931842865273Burkholderia sp. CCGE1003 chromosome 1, complete sequencehistone family protein DNA-binding protein4e-1476.6
NC_002488:1099975:114255611425561142840285Xylella fastidiosa 9a5c, complete genomehistone-like protein7e-1475.9
NC_015422:1694363:171325817132581713530273Alicycliphilus denitrificans K601 chromosome, complete genomehistone family protein DNA-binding protein9e-1475.5
NC_009257:1023696:104281710428171043089273Francisella tularensis subsp. tularensis WY96-3418 chromosome,DNA-binding protein HU-beta1e-1375.5
NC_008344:669498:669498669498669770273Nitrosomonas eutropha C91, complete genomehistone family protein DNA-binding protein1e-1375.5
NC_008601:1094041:111318411131841113456273Francisella tularensis subsp. novicida U112, complete genomeDNA-binding protein HU-beta1e-1375.1
NC_011992:1234610:124592112459211246193273Acidovorax ebreus TPSY, complete genomehistone family protein DNA-binding protein2e-1374.7
NC_008782:2781229:279335227933522793624273Acidovorax sp. JS42, complete genomehistone family protein DNA-binding protein2e-1374.7
NC_007626:2354260:236467623646762364954279Magnetospirillum magneticum AMB-1, complete genomeBacterial nucleoid DNA-binding protein5e-1373.2
NC_013446:1889500:189372218937221893994273Comamonas testosteroni CNB-2, complete genomehistone-like DNA-binding protein6e-1372.8
NC_007626:959684:993045993045993323279Magnetospirillum magneticum AMB-1, complete genomeBacterial nucleoid DNA-binding protein9e-1372.4
NC_004603:3080614:310021231002123100487276Vibrio parahaemolyticus RIMD 2210633 chromosome I, completeDNA-binding protein HU-21e-1272
NC_007484:1975322:199732119973211997593273Nitrosococcus oceani ATCC 19707, complete genomeHistone-like DNA-binding protein1e-1271.6
NC_007626:1038214:104975510497551050087333Magnetospirillum magneticum AMB-1, complete genomeBacterial nucleoid DNA-binding protein1e-1271.6
NC_011725:1486635:149603414960341496306273Bacillus cereus B4264 chromosome, complete genomeDNA-binding protein HU3e-1270.9
NC_009380:4729340:473195847319584732233276Salinispora tropica CNB-440 chromosome, complete genomehistone family protein DNA-binding protein2e-1270.9
NC_007948:1574881:160283616028361603147312Polaromonas sp. JS666, complete genomehistone-like DNA-binding protein4e-1270.1
NC_015383:368500:376195376195376473279Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequencehistone family protein DNA-binding protein5e-1269.7
NC_016445:2663837:270243927024392702711273Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA-binding protein HU5e-1269.7
NC_007517:1792000:180801818080181808308291Geobacter metallireducens GS-15, complete genomeHistone-like DNA-binding protein7e-1269.3
NC_014934:3809845:382531538253153825587273Cellulophaga algicola DSM 14237 chromosome, complete genomehistone family protein DNA-binding protein1e-1168.6
NC_007946:3683371:370576937057693706041273Escherichia coli UTI89, complete genomeDNA-binding protein HU-alpha (HU-2)1e-1168.6
NC_009437:1556934:156381915638191564106288Caldicellulosiruptor saccharolyticus DSM 8903, complete genomehistone family protein DNA-binding protein1e-1168.6
NC_014532:3596097:360212336021233602398276Halomonas elongata DSM 2581, complete genomeK03530 DNA-binding protein HU-beta1e-1168.6
NC_015571:411156:429426429426429692267Porphyromonas gingivalis TDC60, complete genomeDNA-binding protein HU1e-1168.6
NC_014152:191200:195060195060195332273Thermincola sp. JR, complete genomehistone family protein DNA-binding protein1e-1168.2
NC_011898:2907017:292558029255802925855276Clostridium cellulolyticum H10, complete genomehistone family protein DNA-binding protein1e-1168.2
NC_007298:1824335:184224018422401842512273Dechloromonas aromatica RCB, complete genomeHistone-like bacterial DNA-binding protein2e-1167.8
NC_007930:50801:564885648856763276Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118,DNA-binding protein HU3e-1167
NC_004061:31500:357213572135993273Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomeDNA-binding protein hu-alpha5e-1166.6
NC_008609:1976403:206114520611452061411267Pelobacter propionicus DSM 2379, complete genomehistone family protein DNA-binding protein7e-1165.9
NC_011833:31192:353093530935587279Buchnera aphidicola str. 5A (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha1e-1065.5
NC_016626:1699500:173783817378381738116279Burkholderia sp. YI23 plasmid byi_1p, complete sequencehistone family protein DNA-binding protein1e-1065.5
NC_020291:117983:126830126830127105276Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeDNA-binding protein HU1e-1065.1
NC_012034:2623252:263621926362192636497279Anaerocellum thermophilum DSM 6725, complete genomehistone family protein DNA-binding protein1e-1065.1
NC_014652:379833:398080398080398358279Caldicellulosiruptor hydrothermalis 108 chromosome, completehistone family protein DNA-binding protein1e-1065.1
NC_020209:4643901:465937146593714659646276Pseudomonas poae RE*1-1-14, complete genomenucleoid protein HU subunit alpha1e-1065.1
NC_015589:2555000:256458325645832564867285Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehistone family protein DNA-binding protein2e-1064.7
NC_000964:2146000:222453322245332224811279Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein2e-1064.7
NC_004545:15650:374933749337771279Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomeDNA-binding protein HU2e-1064.3
NC_009925:5957806:596688159668815967162282Acaryochloris marina MBIC11017, complete genomeDNA-binding protein HU3e-1063.9
NC_017256:30192:353573535735629273Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,DNA-binding protein HU-alpha3e-1063.9
NC_010723:173280:174948174948175226279Clostridium botulinum E3 str. Alaska E43, complete genomeDNA-binding protein HU3e-1063.9
NC_002528:31191:353083530835586279Buchnera aphidicola str. APS (Acyrthosiphon pisum), completeDNA-binding protein hu-alpha3e-1063.9
NC_011834:31206:353233532335601279Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha3e-1063.9
NC_017252:31215:353313533135609279Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha3e-1063.9
NC_017253:31192:353093530935587279Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha3e-1063.9
NC_017254:31206:353233532335601279Buchnera aphidicola str. JF98 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha3e-1063.9
NC_017255:31211:353283532835606279Buchnera aphidicola str. LL01 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha3e-1063.9
NC_011773:3547507:356972435697243569996273Bacillus cereus AH820 chromosome, complete genomeDNA-binding protein HU3e-1063.5
NC_003909:3483244:350545735054573505729273Bacillus cereus ATCC 10987, complete genomeDNA-binding protein HU3e-1063.5
NC_019745:3066177:308302630830263083310285Gloeocapsa sp. PCC 7428, complete genomehistone family protein DNA-binding protein4e-1063.5
NC_008609:2446246:248416824841682484461294Pelobacter propionicus DSM 2379, complete genomehistone family protein DNA-binding protein5e-1063.2
NC_002737:1207880:122263712226371222912276Streptococcus pyogenes M1 GAS, complete genomehistone-like DNA-binding protein5e-1063.2
NC_009332:653474:654160654160654435276Streptococcus pyogenes str. Manfredo chromosome, complete genomeDNA-binding protein HU5e-1063.2
NC_014394:1626699:163382516338251634106282Gallionella capsiferriformans ES-2 chromosome, complete genomehistone family protein DNA-binding protein1e-0962
NC_017259:25400:347703477035042273Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,DNA-binding protein HU-alpha1e-0961.6
NC_009698:3647955:365023136502313650509279Clostridium botulinum A str. Hall chromosome, complete genomeDNA-binding protein HU2e-0961.2
NC_010516:3845942:384813938481393848417279Clostridium botulinum B1 str. Okra, complete genomeDNA-binding protein HU2e-0961.2
NC_008609:1976403:201336020133602013644285Pelobacter propionicus DSM 2379, complete genomehistone family protein DNA-binding protein2e-0961.2
NC_009925:1109770:112273711227371123012276Acaryochloris marina MBIC11017, complete genomeDNA-binding protein HU2e-0961.2
NC_008262:2649289:270117027011702701445276Clostridium perfringens SM101, complete genomeDNA-binding protein HU2e-0960.8
NC_008148:2290806:231410923141092314381273Rubrobacter xylanophilus DSM 9941, complete genomehistone-like DNA-binding protein2e-0960.8
NC_009483:2201986:222274022227402223015276Geobacter uraniireducens Rf4 chromosome, complete genomehistone family protein DNA-binding protein3e-0960.5
NC_008609:142471:182937182937183212276Pelobacter propionicus DSM 2379, complete genomehistone family protein DNA-binding protein3e-0960.5
NC_014010:175500:178270178270178563294Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeintegration host factor, alpha subunit4e-0960.1
NC_009483:3024115:304724230472423047520279Geobacter uraniireducens Rf4 chromosome, complete genomehistone family protein DNA-binding protein4e-0960.1
NC_009633:168266:184646184646184924279Alkaliphilus metalliredigens QYMF chromosome, complete genomehistone family protein DNA-binding protein6e-0959.7
NC_014483:39729:512505125051522273Paenibacillus polymyxa E681 chromosome, complete genomeDNA-binding protein HU (DNA-binding protein II)5e-0959.7
NC_016641:1639356:164996216499621650234273Paenibacillus terrae HPL-003 chromosome, complete genomeDNA-binding protein hu-alpha5e-0959.7
NC_008609:1976403:204347420434742043854381Pelobacter propionicus DSM 2379, complete genomehistone family protein DNA-binding protein5e-0959.7
NC_016148:1175999:117808711780871178362276Thermovirga lienii DSM 17291 chromosome, complete genomehistone family protein DNA-binding protein6e-0959.3
NC_007517:1561466:158627615862761586551276Geobacter metallireducens GS-15, complete genomeHistone-like DNA-binding protein6e-0959.3
NC_002939:1634843:166893316689331669208276Geobacter sulfurreducens PCA, complete genomeintegration host factor, alpha subunit8e-0958.9
NC_007498:1666242:167333016733301673611282Pelobacter carbinolicus DSM 2380, complete genomeintegration host factor, alpha subunit1e-0858.5
NC_002939:2315402:233912623391262339401276Geobacter sulfurreducens PCA, complete genomeintegration host factor, alpha subunit2e-0858.2
NC_002939:2337402:233912623391262339401276Geobacter sulfurreducens PCA, complete genomeintegration host factor, alpha subunit2e-0858.2
NC_013192:958000:966372966372966653282Leptotrichia buccalis DSM 1135, complete genomehistone family protein DNA-binding protein2e-0858.2
NC_010125:2884762:288998828899882890281294Gluconacetobacter diazotrophicus PAl 5, complete genomeputative DNA binding protein2e-0857.8
NC_009254:74000:792917929179569279Burkholderia vietnamiensis G4 chromosome 3, complete sequencehistone family protein DNA-binding protein2e-0857.8
NC_009922:2850320:286144528614452861723279Alkaliphilus oremlandii OhILAs, complete genomehistone family protein DNA-binding protein2e-0857.8
NC_014614:356746:394283394283394591309Clostridium sticklandii, complete genomeHU, DNA-binding transcriptional regulator, beta subunit2e-0857.8
NC_010815:40357:411964119641477282Geobacter lovleyi SZ plasmid pGLOV01, complete sequencehistone family protein DNA-binding protein3e-0857.4
NC_016629:3396500:342726034272603427532273Desulfovibrio africanus str. Walvis Bay chromosome, completehistone family protein DNA-binding protein3e-0857.4
NC_018145:1089548:110930811093081109583276Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completehistone family protein DNA-binding protein4e-0856.6
NC_010793:30488:319203192032228309Orientia tsutsugamushi str. Ikeda, complete genomeDNA-binding protein HU6e-0856.2
NC_005773:1333863:135101113510111351292282Pseudomonas syringae pv. phaseolicola 1448A, complete genomeDNA-binding protein HU family7e-0855.8
NC_012751:1071589:108388110838811084108228Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeDNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation7e-0855.8
NC_011894:3319856:333073533307353331007273Methylobacterium nodulans ORS 2060, complete genomehistone family protein DNA-binding protein2e-0754.3
NC_002927:3827211:386754438675443867825282Bordetella bronchiseptica RB50, complete genomehistone-like DNA-binding protein3e-0753.9
NC_006138:1571878:158721715872171587528312Desulfotalea psychrophila LSv54, complete genomesimilar to integration host factor, alpha subunit3e-0753.9
NC_014414:167803:178910178910179248339Parvularcula bermudensis HTCC2503 chromosome, complete genomeintegration host factor alpha subunit4e-0753.5
NC_015499:119200:137696137696138016321Thermodesulfobium narugense DSM 14796 chromosome, complete genomehistone family protein DNA-binding protein7e-0752.8
NC_017191:1173989:123411912341191234394276Bacillus amyloliquefaciens XH7 chromosome, complete genomehistone-like prokaryotic DNA-binding protein7e-0752.8
NC_017188:1172181:123254212325421232817276Bacillus amyloliquefaciens TA208 chromosome, complete genomeputative HU-related DNA-binding protein; phage SPbeta7e-0752.8
NC_015717:2479394:249924724992472499552306Hyphomicrobium sp. MC1, complete genomeintegration host factor subunit alpha1e-0652.4
NC_013166:1841446:185437918543791854681303Kangiella koreensis DSM 16069, complete genomeintegration host factor, alpha subunit8e-0752.4
NC_016026:997225:999500999500999796297Micavibrio aeruginosavorus ARL-13 chromosome, complete genomeintegration host factor subunit alpha1e-0652
NC_008095:4061899:408187440818744082257384Myxococcus xanthus DK 1622, complete genomeintegration host factor, beta subunit1e-0652
NC_016629:2971860:298610929861092986384276Desulfovibrio africanus str. Walvis Bay chromosome, completehistone family protein DNA-binding protein1e-0651.6
NC_009483:2489000:250032325003232500598276Geobacter uraniireducens Rf4 chromosome, complete genomehistone family protein DNA-binding protein2e-0651.6
NC_008095:4189082:419269841926984193087390Myxococcus xanthus DK 1622, complete genomeintegration host factor, alpha subunit2e-0651.6
NC_002950:1334500:133467413346741334952279Porphyromonas gingivalis W83, complete genomeDNA-binding protein HU2e-0651.2
NC_015571:1265121:126695712669571267235279Porphyromonas gingivalis TDC60, complete genomeDNA-binding protein HU2e-0651.2
NC_015731:867377:917125917125917433309Nitrosomonas sp. Is79A3 chromosome, complete genomeIntegration host factor subunit alpha2e-0651.2
NC_011979:3045952:305677330567733057048276Geobacter sp. FRC-32, complete genomehistone family protein DNA-binding protein2e-0651.2
NC_012751:1296877:129890012989001299259360Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeDNA-binding protein HU-alpha (HU-2)2e-0651.2
NC_014623:4999032:500264050026405003044405Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeintegration host factor subunit alpha2e-0651.2
NC_004463:5540924:556590355659035566262360Bradyrhizobium japonicum USDA 110, complete genomeintegration host factor alpha subunit2e-0650.8
NC_010544:671431:690915690915691199285Candidatus Phytoplasma australiense, complete genomeDNA-binding protein HU3e-0650.8
NC_011894:5056901:506686150668615067178318Methylobacterium nodulans ORS 2060, complete genomehistone family protein DNA-binding protein3e-0650.8
NC_012691:779826:800490800490800765276Tolumonas auensis DSM 9187, complete genomehistone family protein DNA-binding protein4e-0650.4
NC_007925:2892371:290671829067182907044327Rhodopseudomonas palustris BisB18, complete genomeintegration host factor, alpha subunit3e-0650.4
NC_017190:2130651:222540922254092225684276Bacillus amyloliquefaciens LL3 chromosome, complete genomeSPBc2 prophage-derived DNA-binding protein HU 24e-0650.1
NC_020126:5777895:577995457799545780325372Myxococcus stipitatus DSM 14675, complete genomeintegration host factor subunit beta4e-0650.1
NC_020829:3434736:344845834484583448736279Pseudomonas denitrificans ATCC 13867, complete genomehistone family protein DNA-binding protein5e-0650.1
NC_015222:2089767:209658320965832096879297Nitrosomonas sp. AL212 chromosome, complete genomeintegration host factor, alpha subunit5e-0650.1
NC_002939:2844240:286990028699002870190291Geobacter sulfurreducens PCA, complete genomeDNA-binding protein HU6e-0649.7