Pre_GI: BLASTP Hits

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Query: NC_016822:246715:259248 Shigella sonnei 53G, complete genome

Start: 259248, End: 259991, Length: 744

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:3863932:386393238639323864675744Escherichia coli KO11FL chromosome, complete genometype VI secretion-associated protein2e-123441
CP002516:3863932:386393238639323864675744Escherichia coli KO11, complete genometype VI secretion-associated protein, VC_A0118 family2e-123441
CP002185:234719:247228247228247971744Escherichia coli W, complete genomeT6SS-associated protein2e-123441
NC_011274:1094379:112128611212861122023738Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein3e-82304
NC_011205:1186097:121299412129941213731738Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type VI secretion-associated protein3e-82304
NC_014029:3958811:396220539622053962891687Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-47189
NC_009708:372422:375816375816376502687Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein1e-47189
NC_009381:222735:226120226120226806687Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein1e-47189
NC_003143:4006884:401027840102784010964687Yersinia pestis CO92, complete genomehypothetical protein1e-47189
NC_017154:3898925:390231939023193903005687Yersinia pestis D106004 chromosome, complete genomehypothetical protein1e-47189
NC_017168:1631052:163444616344461635132687Yersinia pestis A1122 chromosome, complete genomehypothetical protein1e-47189
NC_017265:4265659:428327642832764283962687Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein1e-47189
NC_010465:429095:432489432489433175687Yersinia pseudotuberculosis YPIII, complete genomehypothetical protein1e-47189
NC_010634:4234932:425159642515964252282687Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein1e-47189
NC_006155:4302826:432049943204994321185687Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein1e-47189
NC_005126:349658:387412387412388059648Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein5e-42171
NC_012962:293976:307169307169307816648Photorhabdus asymbiotica, complete genomehypothetical protein3e-40165
NC_014228:4331327:434334743433474344018672Xenorhabdus nematophila ATCC 19061, complete genomeconserved hypothetical protein (probable component of SST VI cluster)3e-39162
NC_013892:274297:282828282828283493666Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-38159
NC_015968:4117835:4141012414101241431262115Enterobacter asburiae LF7a chromosome, complete genomeSigma 54 interacting domain-containing protein3e-32138
NC_012913:1832500:184679518467951847421627Aggregatibacter aphrophilus NJ8700, complete genomehypothetical protein3e-0858.9