Pre_GI: BLASTP Hits

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Query: NC_016582:4874500:4897746 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 4897746, End: 4898159, Length: 414

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007333:3244572:325636332563633256776414Thermobifida fusca YX, complete genomehypothetical protein7e-1166.2
NC_016111:1546505:156117815611781561573396Streptomyces cattleya NRRL 8057, complete genomeRegulatory protein (fragment)3e-1063.5
NC_014165:2888961:290422029042202904699480Thermobispora bispora DSM 43833 chromosome, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase3e-1063.5
NC_014210:618500:635276635276635773498Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,putative signal transduction histidine kinase4e-1063.5
NC_013929:3986272:400635840063584006705348Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-0960.5
NC_003888:7337453:735676673567667357356591Streptomyces coelicolor A3(2), complete genomehypothetical protein8e-0959.3
NC_016109:5290000:5314849531484953173112463Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase1e-0858.5
NC_013595:9651019:966629696662969666874579Streptosporangium roseum DSM 43021, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase2e-0857.8
NC_013929:7278414:728643372864337286948516Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-0857
NC_016582:9551123:955554795555479555966420Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein4e-0856.6
NC_003888:4613000:462299346229934623433441Streptomyces coelicolor A3(2), complete genomeAbaA-like regulatory protein9e-0855.8
NC_013510:4960500:496857749685774968981405Thermomonospora curvata DSM 43183, complete genomeputative signal transduction histidine kinase2e-0754.3
NC_013510:4319296:433146443314644331904441Thermomonospora curvata DSM 43183, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase4e-0753.5
NC_015957:7249873:726567072656707266197528Streptomyces violaceusniger Tu 4113 chromosome, complete genome4e-0753.5
NC_003155:921494:9359539359539387272775Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase1e-0651.6
NC_013595:8338619:834591383459138346320408Streptosporangium roseum DSM 43021, complete genome2e-0651.2
NC_018750:6950695:696932569693256969756432Streptomyces venezuelae ATCC 10712, complete genomeputative regulatory protein2e-0651.2
NC_015957:336500:344967344967345599633Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein3e-0650.4
NC_016109:5290000:5311921531192153146922772Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase4e-0650.1
NC_009921:3098271:311324131132413113924684Frankia sp. EAN1pec, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase6e-0649.7
NC_016109:4581467:459704245970424597479438Kitasatospora setae KM-6054, complete genomehypothetical protein6e-0649.7
NC_016111:4003290:401778740177874018248462Streptomyces cattleya NRRL 8057, complete genomehypothetical protein6e-0649.7
NC_016582:10015558:1002419110024191100262512061Streptomyces bingchenggensis BCW-1 chromosome, complete genomemagnesium or manganese-dependent protein phosphatase5e-0649.7
NC_013595:8603188:862337686233768623834459Streptosporangium roseum DSM 43021, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase7e-0649.3
NC_003155:210240:2228712228712246911821Streptomyces avermitilis MA-4680, complete genomehypothetical protein8e-0649.3