Pre_GI: BLASTP Hits

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Query: NC_015848:1708176:1716061 Mycobacterium canettii CIPT 140010059, complete genome

Start: 1716061, End: 1716882, Length: 822

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The Republic of Djibouti, Africa appears to be an exceptional place in terms of tuberculosis (TB) caused by Mycobacterium canettii, a highly unusual tubercle bacillus with unusual smooth colony morphology (STB) related to the M. tuberculosis complex (MTBC). M. canettii was first isolated from a 20-year-old French farmer suffering from pulmonary tuberculosis by G. Canetti in 1969. Since then, this strain has been isolated on rare occasions from patients who lived or were presumably infected in East Africa. It tends to preferentially affect children and foreigners in the Horn of Africa. M. canettii, a possible ancestor of the MTBC, is found almost exclusively in the Horn of Africa where TB is thought to have emerged about 40 000 years ago, coinciding with the expansion of human population out of Africa. The geographical restriction of M. canettii isolates and contrasting genetic diversity are characteristics compatible with a non-human reservoir. With the larger pan-genome reflecting the ancestral, wider gene pool of tubercle bacilli, their lower virulence and faster growth, especially at temperatures below 37 degrees C, plausibly reflecting broader environmental adaptability, STB strains might thus come nearer to the as-yet-unknown missing link between the obligate pathogen M. tuberculosis and environmental mycobacteria (adapted from PMIDs 20831613 and 23291586). Mycobacteria have an unusual outer membrane approximately 8nm thick, despite being considered Gram-positive. The outer membrane and the mycolic acid-arabinoglactan-peptidoglycan polymer form the cell wall, which constitutes an efficient permeability barrier in conjunction with the cell inner membrane.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017026:1686500:169290616929061693727822Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein6e-161566
NC_002945:1680751:168863616886361689457822Mycobacterium bovis AF2122/97, complete genomehypothetical protein6e-161566
NC_002755:1684161:169204616920461692867822Mycobacterium tuberculosis CDC1551, complete genomemmcH protein, putative6e-161566
NC_012207:1681971:168985616898561690677822Mycobacterium bovis BCG str. Tokyo 172, complete genomehypothetical protein6e-161566
NC_008769:1709078:171696317169631717784822Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomehypothetical protein6e-161566
NC_009525:1685522:169340716934071694228822Mycobacterium tuberculosis H37Ra, complete genomehypothetical protein6e-161566
NC_000962:1684005:169189016918901692711822Mycobacterium tuberculosis H37Rv, complete genomehypothetical protein6e-161566
NC_012943:2707677:272075527207552721576822Mycobacterium tuberculosis KZN 1435 chromosome, complete genomehypothetical protein6e-161566
NC_016768:2704350:271742827174282718249822Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein6e-161566
NC_016804:1679357:168724216872421688063822Mycobacterium bovis BCG str. Mexico chromosome, complete genomehypothetical protein6e-161566
NC_009565:1688642:169652716965271697348822Mycobacterium tuberculosis F11, complete genomehypothetical protein2e-160564
NC_019950:1689910:169523216952321696053822Mycobacterium canettii CIPT 140060008 complete genomehypothetical protein4e-160563
NC_010612:2777687:278257227825722783393822Mycobacterium marinum M, complete genomehypothetical protein4e-132470
NC_009719:3532587:355131635513163552140825Parvibaculum lavamentivorans DS-1 chromosome, complete genomephytanoyl-CoA dioxygenase7e-27120
NC_014539:860402:866254866254867072819Burkholderia sp. CCGE1003 chromosome 1, complete sequencePhytanoyl-CoA dioxygenase2e-2099.4
NC_010622:2576110:258842825884282589261834Burkholderia phymatum STM815 chromosome 1, complete sequencePhytanoyl-CoA dioxygenase1e-1790.5
NC_008380:855246:869484869484870305822Rhizobium leguminosarum bv. viciae 3841, complete genomeputative deoxygenase5e-1788.2
NC_017904:4203257:420854942085494209412864Mycobacterium sp. MOTT36Y chromosome, complete genomephytanoyl-CoA dioxygenase (PhyH) family protein2e-1169.7
NC_018643:1037456:104413410441341044949816Alpha proteobacterium HIMB5 chromosome, complete genomePhytanoyl-CoA dioxygenase (PhyH)2e-0963.2
NC_007509:309348:319418319418320296879Burkholderia sp. 383 chromosome 3, complete sequencePhytanoyl-CoA dioxygenase5e-0962
NC_011770:3396637:340830234083023409174873Pseudomonas aeruginosa LESB58, complete genomehypothetical protein6e-0858.2
NC_014623:4662990:467129846712984672137840Stigmatella aurantiaca DW4/3-1 chromosome, complete genomephytanoyl-CoA dioxygenase5e-0755.1
NC_016830:1645879:166220716622071662953747Pseudomonas fluorescens F113 chromosome, complete genomePhytanoyl-CoA dioxygenase2e-0653.1