Pre_GI: BLASTP Hits

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Query: NC_013410:2519441:2546831 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2546831, End: 2548306, Length: 1476

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010803:1573849:1572330157233015738561527Chlorobium limicola DSM 245, complete genomeputative transcriptional regulator4e-125448
NC_011832:913994:9406669406669421681503Candidatus Methanosphaerula palustris E1-9c, complete genomeputative transcriptional regulator2e-93343
NC_015216:1102837:1124530112453011258881359Methanobacterium sp. AL-21 chromosome, complete genomeputative transcriptional regulator1e-42174
NC_009515:510121:5140905140905155441455Methanobrevibacter smithii ATCC 35061, complete genometranscriptional regulator4e-42172
NC_016610:1138995:1145146114514611464951350Tannerella forsythia ATCC 43037 chromosome, complete genomedivergent AAA domain-containing protein8e-41168
NC_019977:302454:3112663112663126121347Methanomethylovorans hollandica DSM 15978, complete genomeputative transcriptional regulator with HTH domain4e-40166
NC_016051:241438:2647172647172660571341Thermococcus sp. AM4 chromosome, complete genomeATP-dependent DNA helicase1e-37158
NC_015387:1091403:1097493109749310988991407Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeputative transcriptional regulator1e-37157
NC_016609:5890292:5930616593061659319801365Niastella koreensis GR20-10 chromosome, complete genomeputative transcriptional regulator1e-37157
NC_012804:903539:9189099189099204051497Thermococcus gammatolerans EJ3, complete genomeTranscription regulator, HTH/deoR family1e-32141
NC_007575:973559:9873209873209886601341Sulfurimonas denitrificans DSM 1251, complete genomeputative transcriptional regulator2e-32140
NC_009943:272158:2846282846282857791152Candidatus Desulfococcus oleovorans Hxd3, complete genomeputative transcriptional regulator2e-32140
NC_019977:1353332:1362774136277413641291356Methanomethylovorans hollandica DSM 15978, complete genomeputative transcriptional regulator with HTH domain2e-31137
NC_011832:619874:6332876332876346571371Candidatus Methanosphaerula palustris E1-9c, complete genomeputative transcriptional regulator7e-30132
NC_010655:373437:3876163876163889831368Akkermansia muciniphila ATCC BAA-835, complete genomeputative transcriptional regulator2e-29130
NC_008578:889907:9001829001829015851404Acidothermus cellulolyticus 11B, complete genomeputative transcriptional regulator4e-29129
NC_015167:2663686:2676821267682126782241404Cellulophaga lytica DSM 7489 chromosome, complete genomeArsR family transcriptional regulator3e-28126
NC_015164:29004:3483234832362081377Bacteroides salanitronis DSM 18170 chromosome, complete genomeputative transcriptional regulator8e-27122
NC_015311:403281:4259074259074273641458Prevotella denticola F0289 chromosome, complete genomedivergent AAA domain-containing protein6e-27122
NC_015873:450593:4561264561264575801455Megasphaera elsdenii DSM 20460, complete genomepredicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen2e-26120
NC_016610:1310275:1338268133826813397311464Tannerella forsythia ATCC 43037 chromosome, complete genomedivergent AAA domain-containing protein2e-26120
NC_009615:3308538:3315480331548033169401461Parabacteroides distasonis ATCC 8503 chromosome, complete genomeATP-dependent DNA helicase1e-25118
NC_008639:2968000:2983953298395329853621410Chlorobium phaeobacteroides DSM 266, complete genomeputative transcriptional regulator2e-25117
NC_013192:232778:2366962366962381591464Leptotrichia buccalis DSM 1135, complete genomeputative transcriptional regulator3e-25116
NC_015500:2866027:2900297290029729017061410Treponema brennaborense DSM 12168 chromosome, complete genomeputative transcriptional regulator7e-25115
NC_004663:4273143:4275431427543142768881458Bacteroides thetaiotaomicron VPI-5482, complete genomeATP-dependent DNA helicase recG3e-23110
NC_014033:1152994:1174275117427511756961422Prevotella ruminicola 23 chromosome, complete genomedivergent AAA domain-containing protein2e-22107
NC_008639:1573971:1588824158882415903081485Chlorobium phaeobacteroides DSM 266, complete genomeputative transcriptional regulator5e-22105
NC_015977:2807782:2823521282352128249361416Roseburia hominis A2-183 chromosome, complete genomeputative transcriptional regulator2e-21104
NC_018721:3155579:3154092315409231555821491Psychroflexus torquis ATCC 700755 chromosome, complete genomeATP binding protein with AAA and HATPase domains3e-21103
NC_009767:2051203:2069909206990920710691161Roseiflexus castenholzii DSM 13941, complete genomeputative transcriptional regulator3e-21103
NC_013410:1152188:1167781116778111693191539Fibrobacter succinogenes subsp. succinogenes S85 chromosome,transcriptional regulator5e-2099.4
NC_017342:1012555:1038341103834110397771437Staphylococcus aureus subsp. aureus TCH60 chromosome, completedivergent AAA domain-containing protein5e-2099.4
NC_015501:1941851:1956323195632319577621440Porphyromonas asaccharolytica DSM 20707 chromosome, completeputative transcriptional regulator6e-2099.4
NC_015676:1009298:1024766102476610262351470Methanosalsum zhilinae DSM 4017 chromosome, complete genomeputative transcriptional regulator5e-1996.3
NC_010995:4338860:4354146435414643556061461Cellvibrio japonicus Ueda107, complete genomeATP-dependent DNA helicase6e-1995.9
NC_008942:875060:876192876192877022831Methanocorpusculum labreanum Z, complete genomehypothetical protein8e-1995.5
NC_019902:1863162:1868352186835218698451494Thioalkalivibrio nitratireducens DSM 14787, complete genomeATP-dependent DNA helicase2e-1894.4
NC_014033:1215790:1237105123710512385381434Prevotella ruminicola 23 chromosome, complete genomedivergent AAA domain-containing protein4e-1893.2
NC_010816:2326453:2340005234000523415521548Bifidobacterium longum DJO10A, complete genomePutative transcriptional regulator7e-1892.4
NC_000868:1130944:113848111384811139344864Pyrococcus abyssi GE5, complete genomehypothetical protein1e-1791.7
NC_015052:1771976:1780316178031617818631548Bifidobacterium longum subsp. infantis 157F, complete genometranscriptional regulator3e-1790.1
NC_014616:1296287:1304526130452613056381113Bifidobacterium bifidum S17 chromosome, complete genomehypothetical protein4e-1789.7
NC_016043:1563505:1567437156743715688881452Taylorella asinigenitalis MCE3 chromosome, complete genomeATP-dependent DNA helicase recG4e-1789.7
NC_019902:1863162:1870066187006618713071242Thioalkalivibrio nitratireducens DSM 14787, complete genomeATP-dependent DNA helicase-like protein8e-1789
NC_014246:1991093:2003133200313320045751443Mobiluncus curtisii ATCC 43063 chromosome, complete genometranscriptional regulator1e-1688.6
NC_007514:904565:936305936305937204900Chlorobium chlorochromatii CaD3, complete genomeputative transcriptional regulator2e-1687.8
NC_007413:1405817:1415938141593814180012064Anabaena variabilis ATCC 29413, complete genomePredicted transcriptional regulator2e-1687.4
NC_015437:816719:8290348290348305061473Selenomonas sputigena ATCC 35185 chromosome, complete genomeputative transcriptional regulator3e-1687
NC_015577:1794560:1822146182214618233241179Treponema azotonutricium ZAS-9 chromosome, complete genomeATP-dependent DNA helicase6e-1685.9
NC_007005:5825925:584072758407275841323597Pseudomonas syringae pv. syringae B728a, complete genomeATP-dependent DNA helicase recG1e-1585.1
NC_006461:953817:9646959646959660501356Thermus thermophilus HB8, complete genomehypothetical protein1e-1585.1
NC_007514:904565:9303709303709315271158Chlorobium chlorochromatii CaD3, complete genomeputative transcriptional regulator1e-1584.7
NC_004307:2208591:2220838222083822224151578Bifidobacterium longum NCC2705, complete genomehypothetical protein with possible DNA binding domain associated with typeI restriction-modification system5e-1583.2
NC_007514:1475323:1488373148837314895811209Chlorobium chlorochromatii CaD3, complete genomeputative transcriptional regulator4e-1583.2
NC_012470:1390285:1426713142671314281311419Streptococcus equi subsp. zooepidemicus, complete genomeDNA-binding protein4e-1583.2
NC_015977:935798:950682950682951569888Roseburia hominis A2-183 chromosome, complete genomehypothetical protein6e-1582.8
NC_017221:535000:5475075475075490841578Bifidobacterium longum subsp. longum KACC 91563 chromosome,hypothetical protein6e-1582.4
NC_013722:1816561:1850985185098518521601176Xanthomonas albilineans, complete genomeputative atp-dependent dna helicase protein8e-1582
NC_014638:1333976:1344016134401613455631548Bifidobacterium bifidum PRL2010 chromosome, complete genometranscriptional regulator9e-1582
NC_009655:866281:8716948716948729051212Actinobacillus succinogenes 130Z chromosome, complete genomeputative transcriptional regulator1e-1481.3
NC_008782:2683989:2689533268953326907081176Acidovorax sp. JS42, complete genomeputative transcriptional regulator3e-1480.5
NC_018691:3437821:3445765344576534473001536Alcanivorax dieselolei B5 chromosome, complete genomehypothetical protein4e-1480.1
NC_015510:6373937:6381529638152963826921164Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeputative transcriptional regulator8e-1479
NC_014151:3611956:3618728361872836203651638Cellulomonas flavigena DSM 20109 chromosome, complete genomeputative transcriptional regulator8e-1479
NC_014644:1275038:1282879128287912842941416Gardnerella vaginalis ATCC 14019 chromosome, complete genomeATP-dependent DNA helicase RecG7e-1479
NC_020304:2008740:200874020087402009627888Desulfocapsa sulfexigens DSM 10523, complete genomehypothetical protein1e-1378.6
NC_014614:1166009:1188968118896811902751308Clostridium sticklandii, complete genomehypothetical protein1e-1378.6
NC_014638:183115:1982581982581998801623Bifidobacterium bifidum PRL2010 chromosome, complete genomeDNA-binding protein2e-1377.8
NC_007404:2743877:2756352275635227582561905Thiobacillus denitrificans ATCC 25259, complete genomePredicted transcriptional regulator3e-1377
NC_015578:1940097:1962951196295119640271077Treponema primitia ZAS-2 chromosome, complete genome4e-1376.6
NC_014638:148527:1539611539611556461686Bifidobacterium bifidum PRL2010 chromosome, complete genomeDNA-binding protein4e-1376.6
NC_014394:942015:9428179428179443131497Gallionella capsiferriformans ES-2 chromosome, complete genomeputative transcriptional regulator5e-1376.3
NC_016610:726128:7499917499917511121122Tannerella forsythia ATCC 43037 chromosome, complete genome7e-1375.9
NC_014914:1327245:134263113426311343533903Taylorella equigenitalis MCE9 chromosome, complete genomehypothetical protein1e-1275.5
NC_018721:943801:9589309589309605731644Psychroflexus torquis ATCC 700755 chromosome, complete genometranscriptional regulator with an ATP-binding domain1e-1275.1
NC_016745:1257397:1267614126761412690021389Oceanimonas sp. GK1 chromosome, complete genomeputative transcriptional regulator1e-1275.1
NC_014033:164670:1778321778321793941563Prevotella ruminicola 23 chromosome, complete genomedivergent AAA domain-containing protein2e-1273.9
NC_015577:2081196:2088094208809420894521359Treponema azotonutricium ZAS-9 chromosome, complete genomeputative transcriptional regulator5e-1272.8
NC_014921:830334:8317958317958332161422Mycoplasma fermentans M64 chromosome, complete genometranscriptional regulator5e-1272.8
NC_015436:1322087:1333234133323413346701437Spirochaeta coccoides DSM 17374 chromosome, complete genomeputative transcriptional regulator6e-1272.8
NC_013851:3142182:3154890315489031561341245Allochromatium vinosum DSM 180 chromosome, complete genomeputative transcriptional regulator1e-1172
NC_013440:971717:9821389821389835891452Haliangium ochraceum DSM 14365, complete genomeputative transcriptional regulator9e-1272
NC_015737:1724590:1733420173342017347991380Clostridium sp. SY8519, complete genomeputative transcriptional regulator containing an HTH domain1e-1171.6
NC_012471:719000:7377957377957392221428Streptococcus equi subsp. equi 4047, complete genomeDNA-binding protein1e-1171.6
NC_013204:74855:7749777497789001404Eggerthella lenta DSM 2243, complete genomeputative transcriptional regulator2e-1171.2
NC_015635:4097711:4115606411560641170511446Microlunatus phosphovorus NM-1, complete genomehypothetical protein2e-1171.2
NC_017080:166180:1747611747611764641704Phycisphaera mikurensis NBRC 102666, complete genomehypothetical protein2e-1170.9
NC_010688:605018:6154626154626167781317Xanthomonas campestris pv. campestris, complete genomeputative DNA-binding protein3e-1170.5
NC_007086:626891:6373356373356386511317Xanthomonas campestris pv. campestris str. 8004, complete genomeATP-dependent DNA helicase3e-1170.5
NC_003902:624828:6352726352726365881317Xanthomonas campestris pv. campestris str. ATCC 33913, completeATP-dependent DNA helicase3e-1170.5
NC_013740:571879:5834425834425846981257Acidaminococcus fermentans DSM 20731, complete genomeputative transcriptional regulator3e-1170.1
NC_009483:3173464:3173464317346431751491686Geobacter uraniireducens Rf4 chromosome, complete genomeputative transcriptional regulator3e-1170.1
NC_015437:438538:4568434568434583301488Selenomonas sputigena ATCC 35185 chromosome, complete genomeputative transcriptional regulator6e-1169.3
NC_016943:2054688:2065953206595320671281176Blastococcus saxobsidens DD2, complete genomeputative transcriptional regulator7e-1168.9
NC_014562:2871765:2881811288181128832171407Pantoea vagans C9-1 chromosome, complete genomehypothetical protein7e-1168.9
NC_009092:1305355:1317630131763013190181389Shewanella loihica PV-4, complete genomeputative transcriptional regulator1e-1068.2
NC_008782:3800500:3802582380258238038501269Acidovorax sp. JS42, complete genomeputative transcriptional regulator1e-1068.2
NC_012489:209016:2123302123302143271998Gemmatimonas aurantiaca T-27, complete genomehypothetical protein1e-1068.2
NC_017218:178564:194295194295195176882Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomehypothetical protein2e-1067.8
NC_008054:245184:263819263819264784966Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completePutative transcriptional regulator (Crp family)3e-1067.4
NC_004757:427483:4360754360754375681494Nitrosomonas europaea ATCC 19718, complete genomehypothetical protein2e-1067.4
NC_007404:1126756:1136104113610411374501347Thiobacillus denitrificans ATCC 25259, complete genomePredicted transcriptional regulator3e-1067
NC_014614:356746:3567463567463580441299Clostridium sticklandii, complete genomehypothetical protein4e-1066.6
NC_017047:3174588:3188621318862131900121392Rahnella aquatilis HX2 chromosome, complete genometranscriptional regulator5e-1066.2
NC_015061:3111211:3124019312401931254101392Rahnella sp. Y9602 chromosome, complete genometranscriptional regulator5e-1066.2
NC_011894:2503639:2508611250861125100291419Methylobacterium nodulans ORS 2060, complete genomeputative transcriptional regulator6e-1065.9
NC_015067:32500:3834238342399911650Bifidobacterium longum subsp. longum JCM 1217, complete genometranscriptional regulator1e-0965.5
NC_017219:51563:5671356713583681656Bifidobacterium longum subsp. infantis ATCC 15697, complete genomeputative transcriptional regulator1e-0965.1
NC_011593:53044:5692856928585771650Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,transcriptional regulator1e-0965.1
NC_017218:31247:4576845768474231656Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomedivergent AAA domain-containing protein1e-0965.1
NC_015703:4933430:4968265496826549697251461Runella slithyformis DSM 19594 chromosome, complete genomeputative transcriptional regulator2e-0964.7
NC_010645:406794:4125234125234140011479Bordetella avium 197N, complete genomehypothetical protein2e-0964.3
NC_005773:106000:1204131204131218821470Pseudomonas syringae pv. phaseolicola 1448A, complete genomecarbon storage regulator related protein2e-0964.3
NC_015873:924392:964272964272965096825Megasphaera elsdenii DSM 20460, complete genomehypothetical protein2e-0964.3
NC_002950:1571383:1604022160402216054611440Porphyromonas gingivalis W83, complete genomehypothetical protein3e-0963.5
NC_015571:801715:8150688150688165191452Porphyromonas gingivalis TDC60, complete genomehypothetical protein4e-0963.5
NC_015656:632960:6535076535076554321926Frankia symbiont of Datisca glomerata chromosome, complete genomeputative transcriptional regulator6e-0962.8
NC_008699:56500:584315843159273843Nocardioides sp. JS614, complete genomehypothetical protein8e-0962.4
NC_015500:2866027:2890651289065128923151665Treponema brennaborense DSM 12168 chromosome, complete genomeputative transcriptional regulator7e-0962.4
NC_010842:2310756:2310756231075623121681413Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosometranscriptional regulator1e-0861.6
NC_010602:2244729:2305370230537023067821413Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'putative ATP-binding protein1e-0861.6
NC_015873:924392:9569229569229584361515Megasphaera elsdenii DSM 20460, complete genomehypothetical protein2e-0860.8
NC_013895:117429:1221781221781236201443Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completedivergent AAA domain protein4e-0860.1
NC_018868:4010615:4021432402143240224511020Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein7e-0858.9
NC_014033:619469:6367676367676383591593Prevotella ruminicola 23 chromosome, complete genomedivergent AAA domain-containing protein1e-0758.2
NC_009254:74000:824418244183328888Burkholderia vietnamiensis G4 chromosome 3, complete sequencetranscriptional regulator2e-0757.8
NC_008570:4009762:4018374401837440202031830Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeATP-dependent DNA helicase RecG3e-0757.4
NC_013194:963735:9637359637359651151381Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete3e-0757
NC_008639:1462000:1476041147604114805194479Chlorobium phaeobacteroides DSM 266, complete genomeprotein of unknown function DUF3233e-0757
NC_009921:8717659:8724418872441887261661749Frankia sp. EAN1pec, complete genomeputative transcriptional regulator3e-0757
NC_016626:1751159:1770488177048817719511464Burkholderia sp. YI23 plasmid byi_1p, complete sequencehypothetical protein5e-0756.2
NC_015160:2239933:225985022598502260551702Odoribacter splanchnicus DSM 20712 chromosome, complete genomeputative transcriptional regulator6e-0756.2
NC_008609:1976403:199746219974621998448987Pelobacter propionicus DSM 2379, complete genometranscriptional regulator, Fis family6e-0756.2
NC_016610:2077603:209933320993332099662330Tannerella forsythia ATCC 43037 chromosome, complete genomehypothetical protein7e-0755.8
NC_004578:5336773:5412009541200954130491041Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein1e-0655.5
NC_004757:2730057:2759505275950527613911887Nitrosomonas europaea ATCC 19718, complete genomepossible ATP-dependent DNA helicase RecG-related protein1e-0655.1
NC_008782:3800500:3810915381091538128011887Acidovorax sp. JS42, complete genomeputative transcriptional regulator1e-0655.1
NC_016627:4535000:4538012453801245391511140Clostridium clariflavum DSM 19732 chromosome, complete genomeputative transcriptional regulator with HTH domain1e-0655.1
NC_014844:1818939:1826351182635118281891839Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeAAA-4 family protein2e-0654.3
NC_014251:440875:4415594415594430731515Streptococcus pneumoniae TCH8431/19A chromosome, complete genometranscriptional regulator7e-0652.4
NC_010380:254088:2553392553392568531515Streptococcus pneumoniae Hungary19A-6, complete genomedivergent AAA domain family7e-0652.4
NC_012469:198096:1993471993472008611515Streptococcus pneumoniae Taiwan19F-14, complete genomedivergent AAA domain family7e-0652.4
NC_006155:2116834:2126922212692221279681047Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein8e-0652.4