Pre_GI Gene

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Host: NC_004307 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004307:2208591 Bifidobacterium longum NCC2705, complete genome

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: This strain was isolated from infant feces. Normal human gut flora. Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
220859122098021212probable aminotransferaseQuickGO ontologyBLASTP
221039622137073312isoleucyl-tRNA synthetaseQuickGO ontologyBLASTP
22139032214553651truncated type I restriction system specificity proteinQuickGO ontologyBLASTP
22145462215475930phage family integraseQuickGO ontologyBLASTP
22154662216035570truncated type I restriction system specificity proteinQuickGO ontologyBLASTP
22160692217004936mrr restriction endonucleaseQuickGO ontologyBLASTP
221703622196032568HsdMQuickGO ontologyBLASTP
221960322208231221HsdS specificity protein of type I restriction-modification systemQuickGO ontologyBLASTP
222083822224151578hypothetical protein with possible DNA binding domain associated with typeI restriction-modification systemQuickGO ontologyBLASTP
222240222256893288HsdR-like protein of type I restriction modification systemQuickGO ontologyBLASTP
222575722269771221S-adenosylmethionine synthetaseQuickGO ontologyBLASTP
22272552227539285DNA-directed RNA polymerase omega subunitQuickGO ontologyBLASTP
222774222296041863dihydroxy-acid dehydrataseQuickGO ontologyBLASTP
22296952230681987methionyl-tRNA formyltransferaseQuickGO ontologyBLASTP
22307052231409705possible alpha beta hydrolaseQuickGO ontologyBLASTP
223146822337802313primosome assembly protein PriAQuickGO ontologyBLASTP
22338202234572753probable phosphoserine phosphataseQuickGO ontologyBLASTP
22345932235291699hypothetical conserved transmembrane protein in the DedA familyQuickGO ontologyBLASTP
223535222369171566probable Aaa-family ATPaseQuickGO ontologyBLASTP