Pre_GI: BLASTP Hits

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Query: NC_011982:206784:227851 Agrobacterium vitis S4 plasmid pTiS4, complete sequence

Start: 227851, End: 228921, Length: 1071

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015724:339500:3540603540603551751116Cupriavidus necator N-1 plasmid BB2p, complete sequenceopine oxidase subunit B1e-89330
NC_015136:2282488:2325858232585823270031146Burkholderia sp. CCGE1001 chromosome 1, complete sequenceFAD dependent oxidoreductase2e-88325
NC_007948:4646344:4669711466971146708291119Polaromonas sp. JS666, complete genomeFAD dependent oxidoreductase1e-87323
NC_007948:4646344:4661759466175946628951137Polaromonas sp. JS666, complete genomeFAD dependent oxidoreductase4e-84311
NC_008752:620802:6221756221756233471173Acidovorax avenae subsp. citrulli AAC00-1, complete genomeFAD dependent oxidoreductase3e-83308
NC_007948:4558000:4579787457978745809141128Polaromonas sp. JS666, complete genomeFAD dependent oxidoreductase4e-71268
NC_014910:1912552:1933026193302619341861161Alicycliphilus denitrificans BC chromosome, complete genomefad dependent oxidoreductase3e-70265
NC_003308:1:2997829978310961119Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceD-nopaline dehydrogenase2e-63242
NC_003065:27163:6338163381644991119Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencenopaline oxidase subunit B2e-63242
NC_020210:3341976:3350044335004433511171074Geobacillus sp. GHH01, complete genomesarcosine oxidase subunit beta4e-45182
NC_009328:3322802:3330853333085333319261074Geobacillus thermodenitrificans NG80-2 chromosome, complete genomesarcosine oxidase subunit beta9e-45181
NC_016641:2773757:2781634278163427828421209Paenibacillus terrae HPL-003 chromosome, complete genomesarcosine oxidase subunit beta1e-23110
NC_009718:643200:6625756625756637471173Fervidobacterium nodosum Rt17-B1, complete genomeFAD dependent oxidoreductase2e-22106
NC_007492:3954345:3993694399369439949531260Pseudomonas fluorescens PfO-1, complete genomeFAD dependent oxidoreductase8e-22104
NC_015172:1075592:1104747110474711058681122Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeGlycine oxidase7e-21101
NC_015740:926920:9394409394409405371098Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeFAD-binding oxidoreductase3e-2099.8
NC_012792:310443:3104433104433133972955Variovorax paradoxus S110 chromosome 2, complete genomeFAD dependent oxidoreductase5e-2099
NC_008027:5842740:5844182584418258454321251Pseudomonas entomophila L48, complete genomehydrogen cyanide synthase HcnC3e-1996.3
NC_013947:4363250:4377230437723043784111182Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeFAD dependent oxidoreductase2e-1894
NC_010676:2793237:2819758281975828208821125Burkholderia phytofirmans PsJN chromosome 2, complete sequenceFAD dependent oxidoreductase2e-1893.2
NC_009434:1068281:108088810808881081748861Pseudomonas stutzeri A1501, complete genomeoxidoreductase, FAD-binding3e-1893.2
NC_017030:4588167:4606880460688046079951116Corallococcus coralloides DSM 2259 chromosome, complete genomeglycine oxidase ThiO7e-1891.7
NC_015556:4118304:4123843412384341249161074Pseudomonas fulva 12-X chromosome, complete genomeglycine oxidase ThiO1e-1791.3
NC_010623:1871492:1896546189654618977031158Burkholderia phymatum STM815 chromosome 2, complete sequenceFAD dependent oxidoreductase1e-1790.9
NC_020829:809457:8109308109308120421113Pseudomonas denitrificans ATCC 13867, complete genomeFAD-dependent oxidoreductase1e-1790.9
NC_009439:1075170:1088508108850810895931086Pseudomonas mendocina ymp, complete genomeglycine oxidase ThiO2e-1790.1
NC_015410:1144272:1156632115663211576961065Pseudomonas mendocina NK-01 chromosome, complete genomeglycine oxidase ThiO1e-1687.4
NC_008148:2231045:2267216226721622685021287Rubrobacter xylanophilus DSM 9941, complete genomeFAD dependent oxidoreductase8e-1685.1
NC_021184:2936244:2944356294435629454771122Desulfotomaculum gibsoniae DSM 7213, complete genomeglycine/D-amino acid oxidase, deaminating9e-1684.7
NC_014831:2201246:2223388222338822245871200Thermaerobacter marianensis DSM 12885 chromosome, complete genomeglycine oxidase ThiO9e-1684.7
NC_011144:2674242:2691607269160726927881182Phenylobacterium zucineum HLK1, complete genomeFAD dependent oxidoreductase2e-1583.2
NC_008593:2281896:2294825229482522962581434Clostridium novyi NT, complete genomeglycerol-3-phosphate dehydrogenase3e-1583.2
NC_007948:4558000:4583587458358745847171131Polaromonas sp. JS666, complete genomeFAD dependent oxidoreductase4e-1582.8
NC_011901:3363500:3380830338083033819481119Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeglycine oxidase ThiO7e-1581.6
NC_005945:754517:7561427561427572511110Bacillus anthracis str. Sterne, complete genomeglycine oxidase8e-1581.6
NC_008463:5364428:5368835536883553699291095Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative Glycine/D-amino acid oxidases2e-1480.5
NC_018080:5192264:5197779519777951988551077Pseudomonas aeruginosa DK2 chromosome, complete genomeD-amino acid oxidase2e-1480.5
NC_020291:5409587:5419225541922554203521128Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeglycine/D-amino acid oxidase2e-1480.1
NC_014815:4621552:4650013465001346511611149Micromonospora sp. L5 chromosome, complete genomefad dependent oxidoreductase8e-1478.2
NC_005773:5684000:5706494570649457076481155Pseudomonas syringae pv. phaseolicola 1448A, complete genomeoxidoreductase, FAD-binding2e-1377.4
NC_013522:991649:1012936101293610140871152Thermanaerovibrio acidaminovorans DSM 6589, complete genomeFAD dependent oxidoreductase2e-1376.6
NC_007516:2277910:2302913230291323039801068Synechococcus sp. CC9605, complete genomeputative thiamine biosynthesis oxidoreductase7e-1375.1
NC_003413:1666520:1669331166933116704671137Pyrococcus furiosus DSM 3638, complete genomesarcosine oxidase, subunit beta1e-1274.7
NC_000918:465627:4835834835834846441062Aquifex aeolicus VF5, complete genomehypothetical protein9e-1374.7
NC_005125:2269343:2288011228801122890661056Gloeobacter violaceus PCC 7421, complete genomeprobable oxidoreductase9e-1374.7
NC_014394:2228470:2232697223269722337611065Gallionella capsiferriformans ES-2 chromosome, complete genomeglycine oxidase ThiO1e-1274.3
NC_015425:2528549:2545129254512925465621434Clostridium botulinum BKT015925 chromosome, complete genomeFAD-dependent oxidoreductase1e-1274.3
NC_013523:2560000:2574631257463125757641134Sphaerobacter thermophilus DSM 20745 chromosome 1, complete genomeFAD dependent oxidoreductase6e-1272
NC_015875:1505034:1509768150976815108711104Streptococcus pseudopneumoniae IS7493 chromosome, complete genomeoxidoreductase, DadA family protein1e-1170.9
NC_019896:2805098:2830603283060328317121110Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeGlycine oxidase5e-1168.9
NC_000961:1532245:1534456153445615355891134Pyrococcus horikoshii OT3, complete genomesarcosine oxidase5e-1168.9
NC_016642:1913432:1944993194499319461381146Pseudovibrio sp. FO-BEG1 chromosome, complete genomesarcosine oxidase, beta subunit family protein1e-1067.4
NC_011894:4013830:4043380404338040446151236Methylobacterium nodulans ORS 2060, complete genomeFAD dependent oxidoreductase1e-1067.4
NC_010730:741842:7791637791637802601098Sulfurihydrogenibium sp. YO3AOP1, complete genomeglycine oxidase ThiO2e-1067.4
NC_014205:760428:7604287604287615701143Staphylothermus hellenicus DSM 12710 chromosome, complete genomeFAD dependent oxidoreductase2e-1067
NC_009952:2381601:2389926238992623911761251Dinoroseobacter shibae DFL 12, complete genomeputative sarcosine oxidase, beta subunit2e-1067
NC_009482:2051890:2068353206835320694951143Synechococcus sp. RCC307 chromosome, complete genomeglycine/D-amino acid oxidase family protein2e-1066.6
NC_013456:3011518:3011518301151830127741257Vibrio sp. Ex25 chromosome 1, complete genomeD-amino acid dehydrogenase small subunit3e-1066.2
NC_000868:318434:3212723212723224111140Pyrococcus abyssi GE5, complete genomesarcosine oxidase, subunit beta4e-1066.2
NC_013926:71186:8478584785859421158Aciduliprofundum boonei T469 chromosome, complete genomeFAD dependent oxidoreductase5e-1065.5
NC_020064:1854589:1854589185458918557041116Serratia marcescens FGI94, complete genomeglycine/D-amino acid oxidase, deaminating8e-1065.1
NC_015474:301428:3036243036243047571134Pyrococcus sp. NA2 chromosome, complete genomesarcosine oxidase1e-0964.7
NC_007005:2686551:2707924270792427091081185Pseudomonas syringae pv. syringae B728a, complete genomeFAD dependent oxidoreductase3e-0963.2
NC_015559:2745570:2763521276352127647681248Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeSarcosine oxidase3e-0963.2
NC_009481:2204629:2206182220618222073091128Synechococcus sp. WH 7803 chromosome, complete genomeglycine/D-amino acid oxidase family protein7e-0962
NC_014931:3886405:3887567388756738888261260Variovorax paradoxus EPS chromosome, complete genomeFAD dependent oxidoreductase6e-0962
NC_010511:4258000:4286424428642442876591236Methylobacterium sp. 4-46 chromosome, complete genomeFAD dependent oxidoreductase6e-0962
NC_015566:1941407:1941407194140719425311125Serratia sp. AS12 chromosome, complete genomeFAD dependent oxidoreductase2e-0860.8
NC_011894:6485500:6494069649406964953431275Methylobacterium nodulans ORS 2060, complete genomeFAD dependent oxidoreductase2e-0860.5
NC_015942:1711026:1727085172708517281761092Acidithiobacillus ferrivorans SS3 chromosome, complete genomeFAD dependent oxidoreductase2e-0860.5
NC_012483:3731542:3798659379865937997921134Acidobacterium capsulatum ATCC 51196, complete genomeoxidoreductase, FAD-dependent2e-0860.1
NC_019978:2036779:2044852204485220463841533Halobacteroides halobius DSM 5150, complete genomeputative dehydrogenase3e-0860.1
NC_014964:557910:5655755655755670831509Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeFAD dependent oxidoreductase3e-0859.7
NC_010321:562494:5701595701595716671509Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeFAD dependent oxidoreductase3e-0859.7
NC_011894:4013830:4028116402811640293511236Methylobacterium nodulans ORS 2060, complete genomeFAD dependent oxidoreductase8e-0858.5
NC_008391:2404443:2416021241602124171691149Burkholderia cepacia AMMD chromosome 2, complete sequenceFAD dependent oxidoreductase9e-0858.2
NC_018643:807405:8169518169518193832433Alpha proteobacterium HIMB5 chromosome, complete genomefolate-binding FAD dependent oxidoreductase with glycine cleavage system aminomethyltransferase-like protein9e-0858.2
NC_003910:4234000:4238988423898842402381251Colwellia psychrerythraea 34H, complete genomesarcosine oxidase, beta subunit2e-0757
NC_003910:2588000:2595357259535725966071251Colwellia psychrerythraea 34H, complete genomesarcosine oxidase, beta subunit2e-0757
NC_002928:3781657:3789612378961237908651254Bordetella parapertussis 12822, complete genomesarcosine oxidase beta subunit3e-0756.2
NC_009085:1232890:125257312525731253529957Acinetobacter baumannii ATCC 17978, complete genomeD-amino-acid dehydrogenase7e-0755.5
NC_021171:1689518:1704959170495917060681110Bacillus sp. 1NLA3E, complete genomeFAD-dependent glycine oxidase ThiO7e-0755.1
NC_011992:3375929:3375929337592933772391311Acidovorax ebreus TPSY, complete genomeD-amino-acid dehydrogenase8e-0755.1
NC_019974:3013338:3019971301997130225412571Natronococcus occultus SP4, complete genomeglycine cleavage system T protein (aminomethyltransferase)4e-0652.8
NC_016023:1769925:1802942180294218040631122Bacillus coagulans 36D1 chromosome, complete genomeFAD dependent oxidoreductase5e-0652.4
NC_011365:738321:7623657623657636181254Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeD-amino-acid dehydrogenase8e-0651.6
NC_010125:2483122:2509050250905025103031254Gluconacetobacter diazotrophicus PAl 5, complete genomeputative D-amino acid dehydrogenase small subunit8e-0651.6
NC_013757:3012130:3010874301087430121331260Geodermatophilus obscurus DSM 43160, complete genomesarcosine oxidase, beta subunit family8e-0651.6
NC_008148:2498000:2507596250759625088371242Rubrobacter xylanophilus DSM 9941, complete genomeFAD dependent oxidoreductase9e-0651.6