Pre_GI Gene

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Host: NC_003308 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003308:1 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
38715021116agrocinopine synthaseQuickGO ontologyBLASTP
238930726845 proteinQuickGO ontologyBLASTP
352851381611C proteinQuickGO ontologyBLASTP
61396870732C proteinQuickGO ontologyBLASTP
75788273696D proteinQuickGO ontologyBLASTP
87529696945E proteinQuickGO ontologyBLASTP
1028810482195isopentyladenosine phosphotransferaseQuickGO ontologyBLASTP
10349113831035agrocinopine synthesis reductaseQuickGO ontologyBLASTP
11591128471257agrocinopine synthaseQuickGO ontologyBLASTP
1360514126522gene 5 proteinQuickGO ontologyBLASTP
14631160341404indole acetimide hydrolaseQuickGO ontologyBLASTP
16372186392268tryptophan 2-monooxygenaseQuickGO ontologyBLASTP
1933720059723isopentenyl transferaseQuickGO ontologyBLASTP
2057521135561protein 6aQuickGO ontologyBLASTP
2161822241624protein 6bQuickGO ontologyBLASTP
23231244721242D-nopaline dehydrogenaseQuickGO ontologyBLASTP
24980260951116ornithine cyclodeaminaseQuickGO ontologyBLASTP
26092272431152NADNADP octopinenopaline dehydrogenaseQuickGO ontologyBLASTP
2725128225975arginaseQuickGO ontologyBLASTP
28273296911419D-nopaline dehydrogenaseQuickGO ontologyBLASTP
2968829981294hypothetical proteinBLASTP
29978310961119D-nopaline dehydrogenaseQuickGO ontologyBLASTP
31704337402037hydantoin utilization proteinQuickGO ontologyBLASTP
33744356991956hydantoin utilization proteinQuickGO ontologyBLASTP