Pre_GI Gene

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Host: NC_003065 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003065:27163 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
27163292172055secreted effector proteinQuickGO ontology
2964729976330hypothetical proteinBLASTP
3003830409372hypothetical proteinBLASTP
3038531116732hypothetical proteinBLASTP
3114031679540hypothetical proteinBLASTP
3187132599729hypothetical proteinBLASTP
3264132925285hypothetical protein
33790349051116agrocinopine synthaseQuickGO ontologyBLASTP
3579236475684hypothetical proteinBLASTP
36931385411611hypothetical proteinBLASTP
3954240273732beta-glucosidaseQuickGO ontologyBLASTP
4098141676696hypothetical proteinBLASTP
4215543099945hypothetical proteinBLASTP
43752447861035hypothetical proteinBLASTP
44994462501257agrocinopine synthaseQuickGO ontologyBLASTP
4686447529666indole-3-lactate synthaseQuickGO ontologyBLASTP
48034494371404indole acetimide hydrolaseQuickGO ontologyBLASTP
49775520422268tryptophan monooxygenaseQuickGO ontologyBLASTP
5274053462723isopentenyl transferaseQuickGO ontologyBLASTP
5397854538561protein 6aQuickGO ontologyBLASTP
5502155644624protein 6bQuickGO ontologyBLASTP
56634578751242nopaline synthaseQuickGO ontologyBLASTP
58383594981116ornithine cyclodeaminaseQuickGO ontologyBLASTP
59495605771083opine dehydrogenaseQuickGO ontologyBLASTP
6065461628975arginaseQuickGO ontologyBLASTP
61676630941419nopaline oxidase subunit AQuickGO ontologyBLASTP
6309163384294hypothetical proteinBLASTP
63381644991119nopaline oxidase subunit BQuickGO ontologyBLASTP
65107671432037hydantoin utilization protein AQuickGO ontologyBLASTP
67147691021956hydantoin utilization protein BQuickGO ontologyBLASTP